DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and Arid4a

DIOPT Version :9

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:XP_038968184.1 Gene:Arid4a / 314205 RGDID:1307442 Length:1277 Species:Rattus norvegicus


Alignment Length:1508 Identity:381/1508 - (25%)
Similarity:576/1508 - (38%) Gaps:425/1508 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQQMDDPPSLPVGTEVSAKYKGAFCEAKVSKVVRNIKVKVAYKQGLGSGIVSDDAIKAPTGQLRV 65
            |:..|:|..|.|||:|||||:|||||||:..|.|.:||||..||...:.:|.||.:|.|   |||
  Rat    20 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGP---LRV 81

  Fly    66 GAVVEVRHPDRKELVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLT 130
            ||:||.|..| ..:.||.|:|:.|.|.|||||||||..|||||:||||..|||.|||||||||||
  Rat    82 GAIVETRTSD-GSIQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETLDQLPLT 145

  Fly   131 HPEHFGNPVVGGR--RGRRRG-HLNEDSSEDD---DESDAKEVVNEKEENIGKVVCVETESKKKD 189
            :|||||.||:..:  ||||.. .:.||..|::   :|.:.|..:|  :|.:|:||.|   |....
  Rat   146 NPEHFGTPVIAKKTNRGRRSSLPITEDEKEEESSGEEEEDKRRLN--DEFLGRVVNV---SPTAQ 205

  Fly   190 KEKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEF------TREVASKQDVPA 248
            ..:.:|||||:|:....|.:: ||:.|||||.|.::|:|.:|:..|.      ..|:.:|   |.
  Rat   206 STECYPALVVSPSCNDDVTVK-KDQCLVRSFIDSKFYSVARKDIKELDLLSLPESELCTK---PG 266

  Fly   249 VQAALEFLDSSVLPAHWDRDSLFGLTNISSDDEGEIDSDSSDDEPH-----------------EE 296
            ::.|..||.:.::|.:|..|....|.:.||||| |..::..::|..                 ||
  Rat   267 LRRASVFLKARIVPDNWKMDISEILESSSSDDE-ECPAEEHEEEKEKEAKKEEEELPEEELDPEE 330

  Fly   297 KDRFVAQLYKYMDDRGTPLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTP 361
            :|.|:.||||:|:|||||:||.|.:..:|::|::|||.|..:||.:.:.|...||.|.|.||...
  Rat   331 RDNFLQQLYKFMEDRGTPINKAPVLGYKDLNLFKLFRLVYHQGGCDSIDSGAVWKQIYMDLGIPI 395

  Fly   362 CTVSVMNLVKQAYKKFLQPYGDFHRKLGCSMLMTSRNSNRSK------GRSLVRANSVASPKPME 420
            ...:....||.||:|:|..:.::.|...........:..:.|      ..|:..|..||...|:.
  Rat   396 LNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTIHHHEPKVKEEKKDFEESMDEALKVAQEMPLM 460

  Fly   421 TMKTETISKLAQPNQTNVVASTSSSAAAASVAASSTPARAVSTASQSAAEESGNTSESSVVVEPP 485
            .:|:|                               |...:.:.|:|..|::        .::.|
  Rat   461 DVKSE-------------------------------PEENIDSNSESDREDT--------ELKSP 486

  Fly   486 KKQRKGSAASSQQGKVKSLV--EKYEEKSTAVQATSSGTVAGSGASASAAAMPTTSAAASTATNL 548
            :.:||   ...:...:|..:  ||.|:|                                     
  Rat   487 RGRRK---IVREANCIKKELEEEKIEDK------------------------------------- 511

  Fly   549 SSATSGGSATIATTAMNKDA-ESDLPLAKIKAAAVAAASTRHSMEKETNISSGSSASASSKANSA 612
                     .|.....|||| :.|..:|:               :|||.:..|...:...|    
  Rat   512 ---------LIGDDIDNKDADDDDYDIAE---------------KKETELLLGRKTTPKHK---- 548

  Fly   613 EMQRSRDASPSVAAPPSAGASTSGAAATAQTASNKKEKHQRSKQADKEKDKDKEEKQASSGKRKK 677
                                             .||.|.|...:.|.|::::|.:::..:..|..
  Rat   549 ---------------------------------EKKIKQQEDSERDSEEEEEKSQEREETESRCD 580

  Fly   678 EKISVEKIDTGDFVVGIGDKLKVNYHEKKSPSSHGSTYEAKVIEISVQRGVPMYLVHYTGWNNRY 742
            .:...::.||...:.  |.|:||.|...|:.    ..|||.:....:..|..:|||||.|||.||
  Rat   581 SEGEDDEDDTEPCLT--GTKVKVKYGRGKTQ----KIYEASIKSTEMDDGEVLYLVHYYGWNVRY 639

  Fly   743 DEWVPRERIAENLTKGSKQKTRTISTSSANSGSGGGGGGGGGGGGGGGGGGGSLLVQGSQPPGVS 807
            ||||..:||...|.||..:|.:.....:...                                 |
  Rat   640 DEWVKADRIIWPLDKGGPKKKQKKKVKNKED---------------------------------S 671

  Fly   808 DKQPGKDGCSKMSPSSGNSTGPGAPSLSGSLGGASSTPSLLSTVVKTPPTGGAKRGRGRSDSMPP 872
            :|...:|       .....:..|.|.|..:.  :|:.|..||   ||      ....|:|||   
  Rat   672 EKDEKRD-------EERQKSKRGRPPLKSTF--SSNMPYSLS---KT------SNSEGKSDS--- 715

  Fly   873 RSTTPSSVVAHSGRTKSPAASQ--PQLQQQMKKRPTRVVPGTTTPRRVSDASMASESDSDSDEPV 935
               ..|...|.....||..:.:  |.::::::|           ...|.|..:|.|:        
  Rat   716 ---CSSDSEAEDQLEKSSVSEELSPDIKEELEK-----------SENVHDDKLAEEN-------- 758

  Fly   936 RRPKR---QSAKDKPQAGKAQPPGKGRLASSASSTAPAAHPSDDSEEDEEEEEPSAARAASSKQQ 997
              ||.   .:..|:.||..::|     |...|..:....|...|..|..||          .|:|
  Rat   759 --PKTVHISNENDRTQAQPSEP-----LTVEAGDSDQIVHIFGDKVEQAEE----------LKKQ 806

  Fly   998 QQQASSLRGSRAGGNRAMSSGAASAKGRDYDLSEIRSELKG------FQPKLLTNAASNEERKDL 1056
            .:::...:|.|   |:.........|...:...|..||.:|      |......|.:|.|:..|.
  Rat   807 VEKSPKAKGRR---NKTKDLSLELIKISPFSQEEAGSEARGDTHSLEFSSLECKNFSSTEDDVDQ 868

  Fly  1057 AKKEPSDEPAL---QDIKKEPKLESSAKSSSTELSSE--TESYADEDSQSSDYRKQLKGSGAGKK 1116
            .:||...:..:   ...:|:.:||:..: .:|.||.|  .:|...|..:.....::.:..|.|..
  Rat   869 YEKEKKLKRKILGQHSPEKKLRLENGVE-MTTGLSQERSDDSAVAEGVKGVHVEQRFEAEGEGMP 932

  Fly  1117 EPTASPSKLHHEPVTKRELAVKEEPLKIEPKTEPKEEE----------------------TKSKP 1159
            ...|.|.:...||...:..:..|||    ..|..||||                      .|.||
  Rat   933 SLIAEPDQGIQEPTGVKPDSPAEEP----AHTPLKEEEDVMPLIGPETLVCHEVDLDDLDEKEKP 993

  Fly  1160 FLSGADIK----------PTALIAPARFGNTSAAQAASSSGSSSTTAKYTSVIV----------- 1203
            .:....|:          |.|| .|....|.|.|...:.|...|.:.|..|.|.           
  Rat   994 SIEDVVIEGSESNSLGSVPPAL-PPVAQQNFSVASPLTLSQDESRSIKSESDITIEVDSIAEESQ 1057

  Fly  1204 ------------EKPLTIG--------------GKK-----------SVEQHVPKK-AELLKKQS 1230
                        |..:|.|              |:|           ..::..||: :...|.:.
  Rat  1058 EGLCERESANGFEASVTSGACGMIVHERESREKGQKRPSDANSGLMAKKQKRTPKRTSAAAKSEK 1122

  Fly  1231 GGAGGTAASSSAASQESKKFAEPVASLKV-------EMPAACSP----------------SSSSS 1272
            .|||.::.|....:.:|.....||..|.:       ..||..||                ||..:
  Rat  1123 NGAGQSSDSEDLPAMDSSSNCTPVKRLSLPKPQKLPRSPARISPHIKDGEKEKHREKHPNSSPRT 1187

  Fly  1273 SSSSF-----CSTGSAVSSSSATRSLPDMSKLEISSGTVPGATPGAAALQPSNVAQVSSSGAAKE 1332
            ...||     .:..|....|.....|.::.|..:|..:.................:||.:||:..
  Rat  1188 YKWSFQLNELDNMNSTERISFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMS 1252

  Fly  1333 SKYSSSGGAAAGS 1345
            |..|.:|.:.:.|
  Rat  1253 SASSDTGMSPSSS 1265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 RBB1NT 171..262 CDD:285392 31/96 (32%)
ARID 299..381 CDD:279697 35/81 (43%)
Tudor-knot 692..751 CDD:288553 24/58 (41%)
Arid4aXP_038968184.1 Tudor_ARID4A_rpt1 23..80 CDD:410530 31/59 (53%)
Tudor_SF 81..137 CDD:413384 35/56 (63%)
RBB1NT 189..281 CDD:400474 32/100 (32%)
ARID 331..416 CDD:355778 36/84 (43%)
CBD_RBP1_like 597..655 CDD:350843 26/61 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352286
Domainoid 1 1.000 182 1.000 Domainoid score I3367
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 412 1.000 Inparanoid score I1796
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003167
OrthoInspector 1 1.000 - - otm45563
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13964
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2560
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.980

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