DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and cec-7

DIOPT Version :10

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:NP_001022827.1 Gene:cec-7 / 176704 WormBaseID:WBGene00012551 Length:499 Species:Caenorhabditis elegans


Alignment Length:409 Identity:105/409 - (25%)
Similarity:152/409 - (37%) Gaps:83/409 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   425 ETISKLAQPNQTNVVASTSSSAAAASVAASSTPARAVSTASQSAAEESGNTSESS---VVVEPPK 486
            :|.|..|..|.|:  :..:..||.|..|.....|:.|..:|..||:......|||   :.|:||.
 Worm    94 QTASSSADSNGTS--SGATEKAAKAPAATMRKSAKKVDESSSEAADPKAKAEESSQNALKVDPPL 156

  Fly   487 KQRKGSAASSQ-QGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAMPTTS-----AAASTA 545
            ..||.|..::: .|.:|.|....|.:..|.:.|         ....|...|..|     |..|||
 Worm   157 TTRKSSRTTTEATGAMKRLTVAQETEDEAPKET---------VQKKARIEPVDSAEESKAKGSTA 212

  Fly   546 TNLSSATS-GGSATIATTAMNKDAESDLPLAKIKAAAVAAASTRHSME-----KETNISSGSSAS 604
            ....||.. |.|.:.||....|..||.....|::.......|:|.::|     |...::..:...
 Worm   213 PMRKSAKKVGESNSEATDPEAKAKESSQSALKVEPPLTTHNSSRKTVEATGAMKRLTVAKETEDE 277

  Fly   605 ASSKANSAEMQRSRDASPS--VAAPPSA--------GASTSGAAAT-----AQTASNKKEKHQRS 654
            |......|.::...|||.:  .|||.||        .:||:.||.|     ...|...|.|...:
 Worm   278 ALKSQKKARIEPVEDASKAKGSAAPKSASSRAEDGESSSTNDAAGTRFVIGELVACTYKGKVYDA 342

  Fly   655 KQADKEKDKDKEEKQASSGK----RKKEKISVEKIDTGDFVVGIGD---------KLKVNYHEKK 706
            ...|.:.|||.:|......|    |..|:|.:.: :|.....||.|         :.....|||.
 Worm   343 VITDIKPDKDGKECYCIHFKGWNNRYDEQIPIGE-ETDRIFKGIADGYRAPVVTMRKSARNHEKS 406

  Fly   707 SP---------------------------SSHGSTYEAKVIEISVQR-GVPMYLVHYTGWNNRYD 743
            :.                           :.:|..|:|.:::|.... |...|.||:.|||:|||
 Worm   407 TEPQATKENAPRLVGKRREQFIIGEQVTCTQNGKPYDAYIVDIITDTDGKDFYCVHFKGWNSRYD 471

  Fly   744 EWVPRERIAENLTKGSKQK 762
            |.:|.......|.|||..|
 Worm   472 EKIPVGEEQGRLFKGSAAK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 Tudor_ARID4_rpt1 10..60 CDD:410460
Tudor_ARID4_rpt2 65..118 CDD:410461
RBB1NT 170..263 CDD:462390
ARID 296..381 CDD:460187
CBD_RBP1_like 698..758 CDD:350843 20/87 (23%)
cec-7NP_001022827.1 MBT 11..>58 CDD:459242
PTZ00121 <77..>305 CDD:173412 58/221 (26%)
MBT 325..383 CDD:459242 13/58 (22%)
MBT <439..485 CDD:459242 17/45 (38%)
Blue background indicates that the domain is not in the aligned region.

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