Protein Alignment htk and arid3b

DIOPT Version :10

• Sequence 1: NP_573330.3
• Gene: htk / 32877
• FlyBaseID: FBgn0085451
• Length: 2486
• Species: Drosophila melanogaster
• Sequence 2: XP_004916060.1
• Gene: arid3b / 100496484
• XenbaseID: XB-GENE-1018456
• Length: 548
• Species: Xenopus tropicalis
• Alignment Length: 609
• Identity: 129/609 - (21%)
• Similarity: 226/609 - (37%)
• Gaps: 140/609 - (22%)

  Fly    73 HPDRKELVEATITKIQDCSQYTVVFDDGDITTLRRTAL----------CLKS--GRHFNESETLD 125
            ||.:...:||.:.::|...|......:.....:|.|..          .:||  |...|.|.. .
 Frog    31 HPKQGMKLEAVMEQLQKQQQQAARSMEERERQIRETQRLYAQQLASQHAMKSIPGPSPNSSGR-T 94

  Fly   126 QLPLTHPEHFGNPVVGGRRGRRRGHLNEDSSEDDDESDAKEVVNEKEENIGKVVCVETESKKKDK 190
            :||:..|....:|             .:|...|.|.||..:...|:|::               :
 Frog    95 RLPVGPPHSASDP-------------EDDDEMDGDGSDDGDSYEEREDS---------------R 131

  Fly   191 EKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDVPAVQ---AA 252
            |           |..|.   :..:|| ::.::.:..:||.::.|:..|.:..|:: ||.:   |:
 Frog   132 E-----------AHGTT---LAQKYL-QAQRELQGISVPNRQGTQNHRPLTVKEE-PAEENFNAS 180

  Fly   253 LEFLDSSVLPAH-------WDRDSLFGLTNISSDDEG---EIDSDSSDDEPHEEKDRFVAQLYKY 307
            ...|....:..|       |..|. .|.:..:|.|..   |:|||       .::..|:..|:.:
 Frog   181 PGNLHKQNMEEHIKQENSSWCEDP-DGRSRETSRDFAKLYELDSD-------PKRKEFLDDLFMF 237

  Fly   308 MDDRGTPLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVKQ 372
            |..:|||::::|.:..:.:|||.|::.|.::||...|.::..|:.|...|.......|....::.
 Frog   238 MQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRT 302

  Fly   373 AYKKFLQPYGDFHRKLGC-SMLMTSRNSNRSKGRSLVRANSV--ASPKPMET---MKTETISKLA 431
            .|.|:|..|....:.|.. :.|..:.:.||.:||.....:|.  .||.|..|   :....:....
 Frog   303 QYMKYLYLYECEKKSLSSPAELQAAIDGNRREGRRPSYGSSTFSYSPTPQGTSGLLGANKVPVAM 367

  Fly   432 QPNQTNVVASTSSSAA-------------AASVAASSTPARAVSTASQSAAEESGNTSESSVVVE 483
            ....|.:...|:....             :..|....||. .|.|||   .|:..:..|..   |
 Frog   368 MGGHTRISPVTTLKKGDNAVGLMGGRMPLSLPVGTQQTPT-GVRTAS---LEQLKDRLEMG---E 425

  Fly   484 PPKKQRKGSAASSQQGKVKSLVEKYEEK--STAVQATSSGTVAGSGASASAAAMPTTSAAASTAT 546
            ||:|:...::...||   :.:.:.:::.  |.|.|......:.|..|.....|   |....:::.
 Frog   426 PPEKRASRTSVEEQQ---RIIQQAFQQNLLSMARQIPMKLKINGKVAQDRQEA---TLNLGTSSI 484

  Fly   547 NLSSATSGGSATIATTAMNKDAESDLPLAKIKAAAVAAASTRHSMEKETNISSGSSASASSKANS 611
            |:|...:|   |:.|..:.  |:..:||        .|..|..|      :.||||::.|..:.|
 Frog   485 NMSIEING---TMYTGILY--AQKPVPL--------IAGYTGQS------VGSGSSSNTSQASQS 530

  Fly   612 AEMQRSRDASPSVAAPPSAGASTS 635
            ....|         ..|.|..|||
 Frog   531 PTSSR---------GTPGAEPSTS 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
htk	NP_573330.3	Tudor_ARID4_rpt1	10..60	CDD:410460
		Tudor_ARID4_rpt2	65..118	CDD:410461	11/56 (20%)
		RBB1NT	170..263	CDD:462390	16/95 (17%)
		ARID	296..381	CDD:460187	22/84 (26%)
		CBD_RBP1_like	698..758	CDD:350843
arid3b	XP_004916060.1	ARID_ARID3B	213..338	CDD:350643	34/131 (26%)