Protein Alignment: CG18259 and Alyref2

• Sequence 1: NP_573324.1
• Gene: CG18259
• FlyBaseID: FBgn0030956
• Length: 474
• Species: Drosophila melanogaster
• Sequence 2: NP_062357.3
• Gene: Alyref2
• MGIID: 1913144
• Length: 218
• Species: Mus musculus
• Alignment Length: 181
• Identity: 52/182 (29%)
• Similarity: 74/182 (41%)
• Gaps: 36/182 (20%)

  Fly   304 KRDPHISHGIYANENRRKAVGGGGARDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTSNTKD---- 364
            |.|..:...|..|.|:|:...|||.|         .:..|.::..|..|:|.| |.....|
Mouse     4 KMDMSLDDIIKLNRNQRRVNRGGGPR---------RNRPAIARGGRNRPAPYS-RPKPLPDKWQH 58

  Fly   365 ---------------GYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYK 408
                           |.:||||||...|:.|||:|||::.|.:      ||......|||:|.::
Mouse    59 DLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFE 123

  Fly   409 SLEHAEKAVDTYHHRQFDDQPMHCVLVNPH-SSRRSVHKASSRTVTTNSSG 458
            ....|.||:..|.....|.:||...||... ..:|...::.:|...|.|.|
Mouse   124 RRADALKAMKQYKGVPLDGRPMDIQLVTSQIDPQRRPAQSGNRGGMTRSRG 174

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG18259	NP_573324.1	RRM	<345..>443	CDD:223796	37/124 (30%)
		RRM_SKAR	366..434	CDD:241125	27/74 (36%)
Alyref2	NP_062357.3	RRM_THOC4	75..149	CDD:241124	27/74 (36%)
		FYTT	3..>32	CDD:284488	10/37 (27%)
		Sufficient for RNA-binding, interaction with NXF1-NXT1	16..37		8/30 (27%)
		Interaction with HHV-8 ORF57 protein and with ICP27 from HHV-1	54..155		31/101 (31%)
		RRM	<75..>157	CDD:223796	29/82 (35%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG0533
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900