DRSC/TRiP Functional Genomics Resources

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Protein Alignment r and Tmem116

DIOPT Version :10

Sequence 1:NP_523377.1 Gene:r / 32640 FlyBaseID:FBgn0003189 Length:2224 Species:Drosophila melanogaster
Sequence 2:XP_006249466.1 Gene:Tmem116 / 690442 RGDID:1596066 Length:358 Species:Rattus norvegicus


Alignment Length:69 Identity:15/69 - (21%)
Similarity:30/69 - (43%) Gaps:14/69 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   590 QALAHSSQLIVDKSLKGWKEVEYEVV-----RDAYNNCITVCNMENF---------DPLGIHTGE 640
            |||..:||.:::..:.||.:.:::.:     |||......:|:.:..         .||...:..
  Rat   290 QALTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLLCSQKRVYSRSPSASRPPLAFASSS 354

  Fly   641 SIVV 644
            |.|:
  Rat   355 STVL 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rNP_523377.1 CPSaseIIsmall 7..376 CDD:273580
CPSaseII_lrg 403..1455 CDD:273581 15/69 (22%)
CAD_DHOase 1475..1821 CDD:238641
PyrB 1913..2221 CDD:440306
Tmem116XP_006249466.1 None
Blue background indicates that the domain is not in the aligned region.

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