DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk2 and cerk-1

DIOPT Version :10

Sequence 1:NP_647762.3 Gene:Sk2 / 326219 FlyBaseID:FBgn0052484 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_491977.1 Gene:cerk-1 / 172423 WormBaseID:WBGene00020398 Length:549 Species:Caenorhabditis elegans


Alignment Length:685 Identity:144/685 - (21%)
Similarity:228/685 - (33%) Gaps:271/685 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SSRATPPGTQDADEGHDVSDTFYTSQRK------KGSHVFRVR-LDATGFTLQRESPGGSIVKEQ 72
            |||:...|    :.||.::|......:|      :..:||..| ||.:.               :
 Worm    35 SSRSRISG----ESGHLIADVQSPHAKKHRIIFDRDHNVFEFRLLDGSA---------------K 80

  Fly    73 HV---RISDIVGARCMRPKKSRRLAMSGACACSSGNPNSPAISASGDHHRPATTPSKCSTNSRDN 134
            |:   |:.:::...|. |.|.:           :|.|               ..|:|.:|:.:. 
 Worm    81 HIIVYRLDELLSTTCY-PFKIK-----------NGVP---------------IIPTKPTTSDKT- 117

  Fly   135 IPSDGGDVSAFLYVFAYVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHR 199
                       || |.:|.||...:           .|.:..........|.|.|:..:...|.|
 Worm   118 -----------LY-FNFVYKKDKQK-----------WRLKQIPVIFYTTSERDYWHSLIDTTLRR 159

  Fly   200 TLEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHV------TPVLNEAEVPYDLYVTKHSN 258
                      |..|.:.:::.:||..|:|.|:::|..:|      ||.|.     |.:.:|:.:|
 Worm   160 ----------VKNRPKNIIIFINPFGGNGKAQKIFKDNVDAFFWLTPGLR-----YKVVLTERAN 209

  Fly   259 FAIEFLSTRCLDAWCCV---VAVGGDGLFHEIVNGLLQRQDW----------AH-VLPHLALGII 309
            .|.:::.....:.|..:   |:|||||||:|:::|.|.|...          :| |.||:..|||
 Worm   210 HARDYIVEMPPEQWSAIDGLVSVGGDGLFNELLSGALLRTQTDAGRNIDNPSSHLVTPHIRFGII 274

  Fly   310 PCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMDVVRV-QLQSRSLYSFLSIGWGLIS 373
            ..||.|.:. |..|..|:...|      |:.:..|....:||..| |.|.....|..:|.:|.:.
 Worm   275 GAGSANSIV-STVHETNDHATS------AVHIAIGSECNVDVCTVHQHQKLIRISANAISYGWLG 332

  Fly   374 DVDIESERIRMLGYQRFTVWTLYRLVNLRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSC 438
            ||..:||..|.||..|:. |:.     |||              :..|                 
 Worm   333 DVLRDSEEYRCLGPIRYQ-WSA-----LRT--------------TIRH----------------- 360

  Fly   439 NTHIDMLNGPAPIYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISESIYH 503
                       |||....::                                         |:.|
 Worm   361 -----------PIYRGMVQF-----------------------------------------SLSH 373

  Fly   504 SLADESEFAGLAAASLENRQQNYGPASELPDLNEPL----------SEDQGWLVEEGEFVMMHAV 558
                               ::|..|..:||...||.          ..|..|          ||.
 Worm   374 -------------------KENVNPKDQLPPCLEPCPVCMKPQGNDKYDYHW----------HAE 409

  Fly   559 YQTHLGIDC-----------HFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN--MSSGTHLPES 610
            : ||: |.|           ..||...:.|||:.|.|: ..|||.|.:.|:..  |..|..|.|.
 Worm   410 F-THV-ICCVIPTVTPFTPYGLAPFTGIGDGTLDLALV-PRISRFHNMQFMRKVAMYGGKQLYEL 471

  Fly   611 HDDHVKVLPVRAFRLEP---YDNHGIITVDGERVE 642
             |..:....|..:..:|   .::.|:..:|||.:|
 Worm   472 -DPSLNCYRVTKWSYQPDADQEDPGVWNLDGEILE 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk2NP_647762.3 PLN02958 <213..639 CDD:215517 105/472 (22%)
cerk-1NP_491977.1 DAGK_cat <149..505 CDD:445337 111/499 (22%)

Return to query results.
Submit another query.