DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and Pdlim5

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_006501801.1 Gene:Pdlim5 / 56376 MGIID:1927489 Length:734 Species:Mus musculus


Alignment Length:170 Identity:65/170 - (38%)
Similarity:89/170 - (52%) Gaps:3/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|..|.:.|....:.||||:||||.|.|.||...:....|..:.|...|..|:.:.:...|..|:
Mouse   557 MCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQ 621

  Fly    71 KPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPIT- 134
            :.||.:.|.|:.::||..||.| .||.||:.|..|:..||:|||:.||..||...|..||.||. 
Mouse   622 RKILGEVINALKQTWHVSCFVC-VACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEA 685

  Fly   135 -DSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVC 173
             |..:.|:...||..||.|:.|...:..|||....|||:|
Mouse   686 GDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 20/50 (40%)
LIM 7..58 CDD:413332 18/50 (36%)
LIM 66..118 CDD:413332 22/51 (43%)
Pdlim5XP_006501801.1 PDZ_PDLIM-like 5..83 CDD:467235
PHA03307 150..>540 CDD:223039
DUF4749 214..316 CDD:464948
LIM1_ENH 558..609 CDD:188837 18/50 (36%)
LIM2_ENH 617..668 CDD:188841 22/51 (43%)
LIM3_ENH 676..730 CDD:188843 20/50 (40%)
Blue background indicates that the domain is not in the aligned region.

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