DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and Ldb3

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_006252699.3 Gene:Ldb3 / 498587 RGDID:1564875 Length:771 Species:Rattus norvegicus


Alignment Length:170 Identity:60/170 - (35%)
Similarity:90/170 - (52%) Gaps:3/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|..|...|....:.|:|::||||.|.|.:|...:.|..|..:.....|.:|:.:.:...||.|.
  Rat   594 LCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPICAKCN 658

  Fly    71 KPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPIT- 134
            ..|:.:.:.|:.::||..||.| .|||||..|..|:..||:|||:|||.:||:.:|..|:.|:. 
  Rat   659 TKIMGEVMHALRQTWHTTCFIC-AACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEA 722

  Fly   135 -DSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVC 173
             |..:.|:...||..||.|..|...:..|.|....|||:|
  Rat   723 GDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLC 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 17/50 (34%)
LIM 7..58 CDD:413332 15/50 (30%)
LIM 66..118 CDD:413332 23/51 (45%)
Ldb3XP_006252699.3 PDZ_PDLIM-like 49..127 CDD:467235
DUF4749 240..342 CDD:464948
PHA03247 <426..576 CDD:223021
LIM1_ZASP_Cypher 595..646 CDD:188838 15/50 (30%)
LIM2_Enigma_like 654..705 CDD:188748 23/51 (45%)
LIM3_ZASP_Cypher 713..767 CDD:188844 17/50 (34%)
Blue background indicates that the domain is not in the aligned region.

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