DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrp

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_112291.1 Gene:Gabrp / 81658 RGDID:620532 Length:440 Species:Rattus norvegicus


Alignment Length:452 Identity:177/452 - (39%)
Similarity:255/452 - (56%) Gaps:59/452 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFD 110
            |:..||:..|||||||:|:.:.:.|.|||..:|||.|||||.|:||.|.|.|.||.|        
  Rat    43 NLTAGYNKFLRPNFGGDPVRIALTLDIASISSISESNMDYTATIYLRQRWTDPRLVF-------- 99

  Fly   111 DENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLA 175
                :| :...||.....|.:|||||:....|.||||:||..|:|:||..:|.|.|.:|.|||:.
  Rat   100 ----EG-NKSFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVT 159

  Fly   176 CMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYW--KPTPVRGVEDAELPQFTIIGYETNDRKERL 238
            |.|||..||:|:|.|.:::||:||..:||...|  ....|||:|:..|.|:||..|.|.....:.
  Rat   160 CNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSVRGLENLRLAQYTIQQYFTLVTVSQQ 224

  Fly   239 ATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTIS 303
            .||.|.||.|.|:|:||:.||:.:||:||..:|:||||||||:.|:..||..:|:||||:|||:.
  Rat   225 ETGNYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLESVPARTCIGVTTVLSMTTLM 289

  Fly   304 TGVRSSLPRIS-YVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKS 367
            .|.|:|||..: ::||||:||.:||.|||.||||||..:|:...:.|      ||:..|.|  .|
  Rat   290 IGSRTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHYSSLQQMA------VKDRGPAK--DS 346

  Fly   368 ERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQL 432
            |.          :.:.::..|.|.|.:|....|:::..|...              ||    |.|
  Rat   347 EE----------VNITNIINSSISSFKRKISFASIEISGDNV--------------NY----SDL 383

  Fly   433 RRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            ..:|    |.:.:.:...|.|......|   |::.:.:|:||:::||:.|:..|:.||.:|:
  Rat   384 TMKA----SDKFKFVFREKIGRIIDYFT---IQNPSNVDRYSKLLFPLIFMLANVFYWAYYM 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 176/449 (39%)
GabrpNP_112291.1 LIC 43..437 CDD:455710 176/449 (39%)
LGIC_ECD 60..241 CDD:475126 83/193 (43%)

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