DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabra6

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_068613.2 Gene:Gabra6 / 29708 RGDID:61861 Length:453 Species:Rattus norvegicus


Alignment Length:465 Identity:167/465 - (35%)
Similarity:251/465 - (53%) Gaps:61/465 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAF 102
            |||::.:.|:|:|||.||||.|||....|..|:.:.||..:|:|.|:||:.::..|.|.||||.|
  Rat    30 ENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKF 94

  Fly   103 NIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYG 167
            .            |.:::|:|:.....|||.|||||.|.|.|..|::|..|||.||..:|.:.|.
  Rat    95 K------------GPAEILSLNNLMVSKIWTPDTFFQNGKKSIAHNMTTPNKLFRLMQNGTILYT 147

  Fly   168 MRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGV----EDAELPQFTIIG 228
            ||.|....|.|.|..:|:|...|.::..||.|..|:::..||..|:..|    |.:.|.|:.:||
  Rat   148 MRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIG 212

  Fly   229 YETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGI 293
            ...:....:..||.|..:::.|.|||.:|||:.|.|.|.|:.|:||.||||||.|:..||...||
  Rat   213 QTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGI 277

  Fly   294 TTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKE 358
            ||||||||:|...|.|||::||..|:|.::.:||.|||:||:|:||||| :...:::|..::.:.
  Rat   278 TTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNY-FTNLQSQKAERQAQT 341

  Fly   359 CCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMN--LGKFP--PSF 419
            .....:.||:.:|  |...:|:...|.:.    .|::...:.||..:.:...:  |.:.|  ||.
  Rat   342 AAKPPVAKSKTTE--SLEAEIVVHSDSKY----HLKKRISSLTLPIVPSSEASKVLSRTPILPST 400

  Fly   420 RITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLA 484
            .:|                     |.:|             :|.|...:.||:|||::||::|..
  Rat   401 PVT---------------------PPLL-------------LPAIGGTSKIDQYSRILFPVAFAG 431

  Fly   485 FNLGYWLFYI 494
            |||.||:.|:
  Rat   432 FNLVYWIVYL 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 166/462 (36%)
Gabra6NP_068613.2 LIC 34..440 CDD:455710 163/458 (36%)
LGIC_ECD 42..239 CDD:475126 77/208 (37%)

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