DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Glra2

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_036700.1 Gene:Glra2 / 24397 RGDID:2705 Length:452 Species:Rattus norvegicus


Alignment Length:501 Identity:189/501 - (37%)
Similarity:269/501 - (53%) Gaps:79/501 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VGVSCGLFFFLLGA-QLQLIRCIRKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEP 63
            |.:...||.|.||. ..:...|...|..:|:..:.|.:.|:.|       .|||.|:||||.|.|
  Rat     6 VNILTALFAFFLGTNHFREAFCKDHDSRSGKHPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPP 70

  Fly    64 LHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFA 128
            ::|..::.|.||.:::|..|||.:.::|.|.|.|.|||::   :|.||.        |.|.....
  Rat    71 VNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYS---EYPDDS--------LDLDPSML 124

  Fly   129 EKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVE 193
            :.||.||.||||:|.:..||||..|||:|:..:|.|.|.:|.|.||:|.|||..:|:|.|.||::
  Rat   125 DSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQ 189

  Fly   194 IESYGYTVSDVVMYW-KPTPVRGVEDAELPQFTI-----IGYETNDRKERLATGVYQRLSLSFKL 252
            :||:|||::|::..| ...||:..|...||||.:     :||.|    :...||.:..:.:.|.|
  Rat   190 LESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCT----KHYNTGKFTCIEVKFHL 250

  Fly   253 QRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVK 317
            :|.:||::.|.|:||:|||:|||||||||.:|..|||||||||||||||.|:|.|:|||::||||
  Rat   251 ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVK 315

  Fly   318 AIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIEL 382
            ||||::.:|.:|||||||||||||:.   .|..|:..:::          .|.:..:..||:   
  Rat   316 AIDIWMAVCLLFVFAALLEYAAVNFV---SRQHKEFLRLR----------RRQKRQNKEEDV--- 364

  Fly   383 QDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRML 447
                      .|...:|.:                      .||.||....:......:|....|
  Rat   365 ----------TRESRFNFS----------------------GYGMGHCLQVKDGTAVKATPANPL 397

  Fly   448 HALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            ....:.|.|||...  :.....||..||..||::||.||:.||:.|
  Rat   398 PQPPKDADAIKKKF--VDRAKRIDTISRAAFPLAFLIFNIFYWITY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 185/491 (38%)
Glra2NP_036700.1 LIC 46..441 CDD:273305 177/459 (39%)

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