DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrr1

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_032101.3 Gene:Gabrr1 / 14408 MGIID:95625 Length:480 Species:Mus musculus


Alignment Length:453 Identity:178/453 - (39%)
Similarity:257/453 - (56%) Gaps:62/453 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            :..:|..:||.|||..:.||:|:.:.|.|:||||:||:|:|:||..||:||||:|         .
Mouse    82 IDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSF---------P 137

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
            :.:.:|  :|..|...:||||||.||.:.|.||:||.|..|.::|:..||.|.|.:|.|.|..|.
Mouse   138 SSNNLS--MTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCN 200

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP--TPVRGVEDAELPQFTIIGYETNDRKERLA- 239
            ||...:|||:|.|::|||||.||..|:::|||.  ..::..|...|.||.|..:.|.   .:|| 
Mouse   201 MDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTT---TKLAF 262

  Fly   240 ---TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 301
               ||.|.||.::|.|:|:|.:|:.|||.|:.|:||||||||||:..|..|||.|||||||||:|
Mouse   263 YSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMST 327

  Fly   302 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY-TYWGKRAKKKIKKVKECCPGKIG 365
            |.|||.:|:||:||:||:||||.:.|||||.::|||||||| |...:|.::|:::...|      
Mouse   328 IITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISC------ 386

  Fly   366 KSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHS 430
                  ||...:....:.|...|          :..::.:|......|:.|....:.....:...
Mouse   387 ------TCGLPQPRGVMLDSSYS----------DGEVNDLGGYMPENGEKPDRMMVQLTLASERG 435

  Fly   431 QLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            ..:|:.|||.....|:                   :.:.||||||:|||.:::.|||.||..:
Mouse   436 SPQRKGQRGSYVSMRI-------------------NTHAIDKYSRIIFPAAYILFNLIYWSIF 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 178/451 (39%)
Gabrr1NP_032101.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..67
LIC 76..479 CDD:455710 178/451 (39%)
LGIC_ECD_GABAAR_rho 97..282 CDD:349806 83/198 (42%)
Cys-loop 199..213 CDD:349806 7/13 (54%)
Blue background indicates that the domain is not in the aligned region.

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