DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG8117 and RPC11

Sequence 1:NP_573049.2 Gene:CG8117 FlyBaseID:FBgn0030663 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_010330.1 Gene:RPC11 SGDID:S000002452 Length:110 Species:Saccharomyces cerevisiae

Alignment Length:73 Identity:27/74 (36%)
Similarity:34/74 (46%) Gaps:13/74 (18%)


  Fly    96 DMKQMRQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNCS-------QLHIRDGDEPIITFVIC 153
            |.|::.:|.|.|.:... ...|..|||   :|...|  .|.       ||.||..|||:.||..|
Yeast    42 DRKKLPRKEVDDVLGGG-WDNVDQTKT---QCPNYD--TCGGESAYFFQLQIRSADEPMTTFYKC 100

  Fly   154 DECGNRWK 161
            ..||:|||
Yeast   101 VNCGHRWK 108

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG8117NP_573049.2 TFIIS_M 3..109 CDD:284835 5/13 (38%)
Zn-ribbon 118..161 CDD:295390 20/50 (40%)
RPC11NP_010330.1 RPB9 1..110 CDD:224510 27/74 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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