DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG8117 and polr2i

Sequence 1:NP_573049.2 Gene:CG8117 FlyBaseID:FBgn0030663 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_001006013.2 Gene:polr2i ZFINID:ZDB-GENE-041010-106 Length:126 Species:Danio rerio

Alignment Length:159 Identity:32/160 (20%)
Similarity:56/160 (35%) Gaps:52/160 (33%)


  Fly    17 LKSGNMPPG------CGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQK-- 73
            |:.||..||      |.:.::|....||.            :|||.     |...:|.:.:|:  
Zfish     3 LEGGNYEPGFVGIRFCQECNNMLYPKEDK------------ENRIL-----LYACRNCDYQQEAD 50

  Fly    74 ---FLLGQITPEELSKMTPEEMASDDMKQMRQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNC 135
               ..:.:||.|           .|::.|:.....||...         .:|:...|.:|..:..
Zfish    51 NSCIYVNKITHE-----------VDELTQIIADVAQDPTL---------PRTEDHPCPKCGHKEA 95

  Fly   136 --SQLHIRDGDEPIITFVIC--DECGNRW 160
              .|.|....::.:..:.:|  ..||:||
Zfish    96 VFFQSHSMKAEDAMRLYYVCTAPHCGHRW 124

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG8117NP_573049.2 TFIIS_M 3..109 CDD:284835 22/103 (21%)
Zn-ribbon 118..161 CDD:295390 10/48 (21%)
polr2iNP_001006013.2 RPB9 15..126 CDD:224510 27/148 (18%)
RPOL9 16..69 CDD:197822 15/81 (19%)
Zn-ribbon_RPB9 75..125 CDD:259793 12/60 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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