DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8117 and Med26

DIOPT Version :9

Sequence 1:NP_573049.2 Gene:CG8117 / 32499 FlyBaseID:FBgn0030663 Length:162 Species:Drosophila melanogaster
Sequence 2:XP_038950406.1 Gene:Med26 / 306328 RGDID:1309524 Length:609 Species:Rattus norvegicus


Alignment Length:87 Identity:26/87 - (29%)
Similarity:32/87 - (36%) Gaps:24/87 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LLGQITPEELSKMTPEEMASDDMKQMRQKYVQDSINAAQMAKVQGTKTDQFKCERC-----DKRN 134
            ||...||.:|..:| .|:..||:         |.|.|.|...|.|       ||..     |...
  Rat   540 LLPLPTPTDLPGLT-REVTQDDL---------DRIQAQQWPGVNG-------CEDTQGNWYDWTQ 587

  Fly   135 CSQL--HIRDGDEPIITFVICD 154
            |..|  |..||...|:.:|..|
  Rat   588 CISLDPHGDDGRLNILPYVCLD 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8117NP_573049.2 TFIIS_M 3..109 CDD:284835 10/33 (30%)
Zn-ribbon 118..161 CDD:295390 12/44 (27%)
Med26XP_038950406.1 TFS2N 47..107 CDD:197766
Med26_M 199..426 CDD:406186
Med26_C 428..607 CDD:406185 24/83 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.