DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG42299 and Nsmce2

Sequence 1:NP_727866.2 Gene:CG42299 FlyBaseID:FBgn0259195 Length:182 Species:Drosophila melanogaster
Sequence 2:XP_017450247.1 Gene:Nsmce2 RGDID:1305156 Length:273 Species:Rattus norvegicus

Alignment Length:162 Identity:41/163 (25%)
Similarity:74/163 (45%) Gaps:23/163 (14%)


  Fly    30 LLTKNSSNTIEKSE----------EVCKERPEAVEQMR---IDVNNSLEDT-NYMNAVESEAQKN 80
            |..|||....:::|          |:.|:..:..|..|   .|.|.....| |..:.:.::.:.:
  Rat   111 LQDKNSDADFKENEKFVQFKQQLRELKKQLVKPREDGRHNEFDPNKDSSRTGNERDGIHADREND 175

  Fly    81 -IAGLDEDLIMEDFGVEVVPFHDPWSKLLIKHPVRNKRCGHIYDRETVLMII----KDNIGILCP 140
             |.|:|||:|:..   ....|..|.::|.:|.||:||.|||.|:.|.::.:|    |......||
  Rat   176 GIEGMDEDMIVTQ---SQTNFICPITQLEMKKPVKNKMCGHTYEEEAIVRMIESKHKRKKKACCP 237

  Fly   141 VRDCPNLSDIKLEHLVKDPDVEQELQKRKSDK 172
            ...|.: :|:::..|:.|..:.:.::.....|
  Rat   238 KIGCSH-TDMRMSDLIPDEALRRAIESHNKKK 268

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG42299NP_727866.2 RING 86..144 CDD:302633 20/62 (32%)
Nsmce2XP_017450247.1 zf-Nse 182..242 CDD:288622 21/63 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG2979
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 52 1.000 Inparanoid score I5290
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0002478
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR21330
Phylome 1 0.910 0.900 Consistency score
TreeFam 1 0.960
65.920

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