DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5347 and Mkrn3

DIOPT Version :10

Sequence 1:NP_572970.1 Gene:CG5347 / 32403 FlyBaseID:FBgn0030578 Length:285 Species:Drosophila melanogaster
Sequence 2:NP_001386880.1 Gene:Mkrn3 / 292988 RGDID:1311197 Length:528 Species:Rattus norvegicus


Alignment Length:347 Identity:129/347 - (37%)
Similarity:171/347 - (49%) Gaps:86/347 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QTICRFHLLGICRFGDLCRFSHD-------------------------------------ETTPN 34
            |.:||::|.|.|:.||.||:|||                                     |..|.
  Rat    95 QILCRYYLHGQCKEGDNCRYSHDLSGRRKARGGQDSQPRASADRGPKMATHWEPPTQEVAEAPPT 159

  Fly    35 DNQS--PQISEIAD------EV-----------------VENEQVVASTSSYSRQMTWANAPEFV 74
            .:.|  |.|...|:      |:                 ::|..:.|..:..:....|..|.|||
  Rat   160 ASSSSLPLIGSAAERGFSEAEIDNAGIGSAAERGFPEAEIDNAGLAAGAAGGAGAEGWEGAIEFV 224

  Fly    75 P--RYKAN-------SADFQATEGVQD-----------ICPYG--GSCIWGSKCSYPLHMEICKM 117
            |  .|:..       .|..|:.|..::           :|.|.  |.|:.|.:|:|| |.|||.|
  Rat   225 PGQPYRGRMIPPHGPEAPLQSPEIEREHMAMGMGMPLPLCRYAARGQCLRGDRCAYP-HGEICDM 288

  Fly   118 CDLYCLHPMDQNQRRAHNRECLEQHEQAMELSFAIARSKDKMCGICFDTVVEKKG-RERRFGILS 181
            |....|||.|..|:.||.|.|:|.||:.||||||:.||.||:||||.:.|.||.. .:||||||.
  Rat   289 CGQQALHPWDAAQQEAHRRACVEAHERDMELSFAVQRSMDKVCGICMEVVYEKADPSDRRFGILF 353

  Fly   182 KCKHIFCLTCIRTWRQAHQFEATVTRGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAK 246
            .|.|.:||.|||.||.|.|||..:::.||:|||.|.||.||.:||:.:|||:||:.:|:..|..|
  Rat   354 SCNHTYCLKCIRRWRSATQFENRISKSCPQCRVSSGFVIPSEFWVEEEEEKEKLVQQYKEGMSQK 418

  Fly   247 DCKYFNGGLGKCPFGNKCFYRH 268
            .|:||.||||.||||..|||:|
  Rat   419 ACRYFAGGLGHCPFGEFCFYKH 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5347NP_572970.1 zf-CCCH_4 8..29 CDD:465626 10/20 (50%)
PHA03096 <80..239 CDD:222981 82/179 (46%)
RING-HC_MKRN 158..213 CDD:438184 29/55 (53%)
Mkrn3NP_001386880.1 zf-CCCH_4 96..117 CDD:465626 10/20 (50%)
PHA03096 <272..420 CDD:222981 79/148 (53%)
RING-HC_MKRN1_3 328..388 CDD:319644 33/59 (56%)
MKRN1_C 442..528 CDD:464890
Blue background indicates that the domain is not in the aligned region.

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