Protein Alignment Rtc1 and RCL1

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_014633.1
• Gene: RCL1 / 854152
• SGDID: S000005370
• Length: 367
• Species: Saccharomyces cerevisiae
• Alignment Length: 383
• Identity: 123/383 - (32%)
• Similarity: 213/383 - (55%)
• Gaps: 39/383 - (10%)

  Fly    13 YRGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSV 77
            ::||...:.|::||.|||||:||.:|||.| ..|||::||:|.:||::.:|||:.||::..||:|
Yeast    11 FQGSQNFRLRIVLATLSGKPIKIEKIRSGD-LNPGLKDYEVSFLRLIESVTNGSVIEISYTGTTV 74

  Fly    78 MFSPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALS 142
            ::.||::.||...|.|...:.:||:::.::.|.||.|.......:|:|.|.:...::.||...:.
Yeast    75 IYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEAIKWGLMP 139

  Fly   143 LLKRFLLVDEGLE---LKVVRRGVAPLGGGEI------IFRCPVRKSLRAIQFQSQGMVKRIRGT 198
            ::::|     |:.   |..::||..||||||:      :...|:  ::..|   .:.::..|.|.
Yeast   140 VMEKF-----GVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPI--TMHEI---DRPIISSITGV 194

  Fly   199 VYACKVSPAMANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTD-GVCFAAD 262
            .|:.:|||::.||.::.||..:.....:|.|..|..:|:.||.|||:||.|:|::.. |..:.|
Yeast   195 AYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQKGWSYFA- 258

  Fly   263 CCSNTREESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALS 327
                  |:..|..||||.||::||.:||:||.:...|..:...||.:|:.:|::.:.:..... .
Yeast   259 ------EDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGRLRINK-E 316

  Fly   328 NYTVHFLQHLRDFFSITFKLENPEA--EDEDEAENVRGAQKVLMACVGIGYTNINKRV 383
            .....|:..|||.    .|:.|.|.  :..|||:|    :.::....|||:||.:|::
Yeast   317 QIDERFIILLRDI----KKIFNTEVFLKPVDEADN----EDMIATIKGIGFTNTSKKI 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	123/383 (32%)
RCL1	NP_014633.1	18S_RNA_Rcl1p	10..367	CDD:274564	123/383 (32%)