Protein Alignment Rtc1 and rcl1

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_001003865.1
• Gene: rcl1 / 445388
• ZFINID: ZDB-GENE-040930-11
• Length: 367
• Species: Danio rerio
• Alignment Length: 371
• Identity: 197/371 - (53%)
• Similarity: 268/371 - (72%)
• Gaps: 7/371 - (1%)

  Fly    13 YRGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSV 77
            :.|.:..:|||:|:.||||||||..|||:|:. ||||::|.|.||:|||:||||:||:|..||.:
Zfish     3 FEGCSGFRQRLVLSTLSGKPVKIRNIRSKDDN-PGLRDFEASFIRMLDKLTNGTRIEINQTGTVL 66

  Fly    78 MFSPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALS 142
            .:.||||:||.:.|:|.|||.:||||:||:.|.||.|:|::..|:|:||....||||.:|..|:.
Zfish    67 FYQPGLLYGGSVEHECNVQRSVGYYLEALLMLAPFMKTPIKAVLKGITNHPTDPSVDLLKVTAVP 131

  Fly   143 LLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSPA 207
            |:|||.:..:|||:|||:||:||.||||:.|.|||.:|::.:|....|.:||||||.::.:|||.
Zfish   132 LMKRFGINGDGLEIKVVKRGMAPGGGGEVHFSCPVSRSMKPVQLTEAGKIKRIRGTAFSVRVSPQ 196

  Fly   208 MANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTREESE 272
            ||||.|::|:..:.||:||:|||||..||..||.|||||:.|:|||.:||...|:..|..:.:.|
Zfish   197 MANRIVDSARSILNKFIPDIYIYTDHMKGPNSGKSPGFGLVLVAETLNGVFLGAEVVSTPQGQGE 261

  Fly   273 DTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYTVHFLQHL 337
              ..:||:||:..|..||:||||||||||:.|.||.||:.|||:.|||.|.|.||.||:.||:|:
Zfish   262 --MQLPEDLGRNCAKLLLEEIYRGGCVDSTNQSLALLYMTLGQQEVSKTLLGPLSPYTMDFLRHI 324

  Fly   338 RDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTNINKRV 383
            ||||.|.||:|. :...|||.   :|.:||||.|||.||.||:|.:
Zfish   325 RDFFQIMFKIET-QKPSEDEC---KGGEKVLMTCVGAGYNNISKSI 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	197/371 (53%)
rcl1	NP_001003865.1	18S_RNA_Rcl1p	1..366	CDD:274564	197/369 (53%)