Protein Alignment Rtc1 and rtca

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_955830.1
• Gene: rtca / 321129
• ZFINID: ZDB-GENE-030131-9687
• Length: 363
• Species: Danio rerio
• Alignment Length: 373
• Identity: 104/373 - (27%)
• Similarity: 170/373 - (45%)
• Gaps: 37/373 - (9%)

  Fly    15 GSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMF 79
            |...|:....|:|:.|..:||::||:...| ||||...:|.:.||..:.||.........:.:..
Zfish    16 GGQILRVSAALSCIQGASIKINKIRAGRST-PGLRPQHLSGLELLRDMCNGNLEGATVGSSEITL 79

  Fly    80 SPGLLHGGQLNH--DCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALS 142
            :||.:.||  ||  |......:...:...:....|.:.|.:..|:|.||::.:|.:|:.......
Zfish    80 TPGKIKGG--NHIADTHTAGSVTLLMQVSLPCALFAQGPSELCLKGGTNAEMAPQIDYTVKVFKP 142

  Fly   143 LLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSP- 206
            :::|| .|....:|::  ||..|.||||::.:....|.|..|....:|.:.:|.|..:...|.|
Zfish   143 IVERF-GVQFDCDLRM--RGYYPKGGGEVVLKVNPAKELSPINMTERGNITKIYGRAFVAGVLPF 204

  Fly   207 AMANRTVEAAKGCMLKFLPDVYIYTD--QNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTRE 269
            .:|.....||...:.|.:.|:||...  |.|.|..||  |.||.:|||::.|..||.........
Zfish   205 KLAKDMSTAAIRTIRKEIKDLYINIQSLQEKDKACGN--GNGIIIIAESSTGCIFAGSSLGKKGV 267

  Fly   270 ESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYT---V 331
            .:       :.:|.|.|..||..|...||||...|....:::||. ...|:..||.::.:|   :
Zfish   268 YA-------DKVGIEAAEMLLRNIRHNGCVDEFLQDQLIIFMALA-NGTSRMRTGPITLHTQTAI 324

  Fly   332 HFLQHLRDF-FSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTN 378
            |..:.|.:. |:|:      :||||:..:.      .::.|.|:|.||
Zfish   325 HVAEQLTNAKFAIS------KAEDENANDT------YIIECQGVGATN 360

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	104/373 (28%)
rtca	NP_955830.1	RNA_Cyclase_Class_II	8..339	CDD:238446	95/344 (28%)