Protein Alignment Rtc1 and Rtca

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_001004227.1
• Gene: Rtca / 295395
• RGDID: 1303111
• Length: 366
• Species: Rattus norvegicus
• Alignment Length: 371
• Identity: 96/371 - (25%)
• Similarity: 164/371 - (44%)
• Gaps: 30/371 - (8%)

  Fly    15 GSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMF 79
            |...|:....|:||.|.|:::.:||:...| ||||...:|.:.::..:.:|.........|.:.|
  Rat    16 GGQILRVSTALSCLLGLPLRVQKIRAGRST-PGLRPQHLSGLEMVRDLCDGHLEGAEIGSTEITF 79

  Fly    80 SPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLL 144
            :|..:.||....|......:...:...:....|..||.:..|:|.||::.:|.:|:.......:.
  Rat    80 TPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDYTMMVFKPIA 144

  Fly   145 KRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSP-AM 208
            ::|...   ....:..||..|.||||:|.|....|.|..|....:|.|.:|.|..:...|.| .:
  Rat   145 EKFGFT---FNCDIKTRGYYPKGGGEVIVRMSPVKRLDPINLTDRGSVTKIYGRAFVAGVLPLKV 206

  Fly   209 ANRTVEAAKGCMLKFLPDVYIY---TDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTREE 270
            |.....||..|:.|.:.|:|:.   ..:.:.:..||  |.||.::|||:.|..||..........
  Rat   207 AKDMAAAAVRCLRKEIRDLYVSIQPVQEARDQAFGN--GSGIIIVAETSTGCLFAGSSLGKRGVN 269

  Fly   271 SEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYT---VH 332
            :       :.:|.|.|..||..:..||.||...|....:::||. ..:|:..||.::.:|   :|
  Rat   270 A-------DKVGIEAAEMLLANLRHGGTVDEYLQDQLIIFMALA-SGISRIKTGPVTLHTQTAIH 326

  Fly   333 FLQHLRDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTN 378
            |.:.|.   ...|.::..| |:||.:::.     .::.|.|:|..|
  Rat   327 FAEQLA---KAKFTVKKSE-EEEDASKDT-----YIIECEGVGMAN 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	96/371 (26%)
Rtca	NP_001004227.1	RNA_3prim_cycl	6..337	CDD:274563	87/337 (26%)