Protein Alignment Rtc1 and Rtca

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: XP_317988.4
• Gene: Rtca / 1278400
• VectorBaseID: AGAMI1_011703
• Length: 367
• Species: Anopheles gambiae
• Alignment Length: 373
• Identity: 93/373 - (24%)
• Similarity: 149/373 - (39%)
• Gaps: 37/373 - (9%)

  Fly    15 GSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMF 79
            |...|:..|..:.|:..||:|..|| :....|||....::.:.|:..|..|...:.....|.:.|
Mosquito    17 GGQILRMALCFSVLTKTPVRIRNIR-QGRKKPGLAAQHLAGVELMRDICQGRLYKACLGSTEIEF 80

  Fly    80 SPG-LLHGGQLNHDCCVQR--GIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAAL 141
            .|| :.||..:.|   :|.  .|...|.|.:.:..|...|:...|||.||:..:|.||.:.....
Mosquito    81 YPGHIEHGRFVGH---IQTAGSITLLLQATLPVAIFSSGPVTLDLRGGTNTDLAPQVDFLTEIFR 142

  Fly   142 SLLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSP 206
            ..::||   ....:..::|||..|.|||:.:......:|||.:.....|.|.|..|..|...|.|
Mosquito   143 PNMERF---GASFDFDLIRRGYFPKGGGQCVIEVRPVQSLRPVTMVDVGSVTRFFGWSYVAGVLP 204

  Fly   207 -AMANRTVEAAKGCMLKFL---PDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNT 267
             .:|:.....||..:.:..   .|:.:|.:.......||..  ||.:..||:.|...........
Mosquito   205 LKIAHEMSSGAKSILNQIANSRADIEVYKESMDMAPEGNCS--GIIIGCETSTGAILGGSALGEA 267

  Fly   268 REESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYTVH 332
            |::...:       |:|.|..:...|..|.|:|...|.:..:.:||.. ..|:..|..|:
Mosquito   268 RKKGFQS-------GEEAAHEIQSAISVGACIDRHVQDMMIILMALAD-GTSRIRTEPLT----- 319

  Fly   333 FLQHLRDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTNIN 380
              .|.:....:|      |...:.:...:.|....::.|||||..|||
Mosquito   320 --MHTKTAIYVT------ELMTKAKFNIIEGNGSAIIECVGIGLRNIN 359

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	93/373 (25%)
Rtca	XP_317988.4	None