Protein Alignment Rtc1 and rcl1

DIOPT Version :10

• Sequence 1: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: XP_031746505.1
• Gene: rcl1 / 100497943
• XenbaseID: XB-GENE-962711
• Length: 372
• Species: Xenopus tropicalis
• Alignment Length: 380
• Identity: 203/380 - (53%)
• Similarity: 273/380 - (71%)
• Gaps: 9/380 - (2%)

  Fly     4 IAQEGNCLIYRGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKI 68
            :|.:||||.|.|.||.:||::|:.|||:||||..||.:|| :||:|::|.|.|||:|||||||:|
 Frog     1 MASQGNCLRYEGCNFFRQRIVLSTLSGRPVKIQGIRVKDE-SPGIRDFEASFIRLMDKITNGTRI 64

  Fly    69 ELNPAGTSVMFSPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSV 133
            |:|..|||:.:.||||.||.|.|||.:||.|||||::|:.|.||.|.|::.|||||||.:..|||
 Frog    65 EINETGTSLYYLPGLLSGGTLEHDCNIQRSIGYYLESLLCLAPFMKHPIKITLRGVTNDQADPSV 129

  Fly   134 DHIKGAALSLLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGT 198
            |.:|..|:.|:|:|.:..|..|||:|:||:.|.||||:||.|||||.||.:|....|.:|||||.
 Frog   130 DTLKATAIPLMKKFGIDGEHFELKIVKRGMPPGGGGEVIFSCPVRKLLRPVQLTDPGKIKRIRGV 194

  Fly   199 VYACKVSPAMANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADC 263
            .|:.:|||.:.||.|:||:..:.:||||:|||||..||..||.|||||:.|:||||:|...:.:.
 Frog   195 AYSVRVSPQIGNRIVDAARSVLNRFLPDIYIYTDHMKGANSGKSPGFGLSLVAETTEGCFLSTEL 259

  Fly   264 CSNTREESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSN 328
            .||  .:.:.:..:||:||:..|:.||:||||||||||..|.|..|.:.|||:.|||.|.|.||.
 Frog   260 ASN--PQGQGSTVLPEDLGRNCAVLLLEEIYRGGCVDSVNQSLVLLLMTLGQQDVSKVLLGPLSP 322

  Fly   329 YTVHFLQHLRDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTNINKRV 383
            ||:.||:|||.||.|.||:|:...|:.      :||:|||:.|||:||:|::|.|
 Frog   323 YTIEFLRHLRSFFQIMFKMESKTFEER------KGAEKVLLTCVGVGYSNLSKPV 371

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	199/373 (53%)
rcl1	XP_031746505.1	18S_RNA_Rcl1p	8..369	CDD:274564	197/369 (53%)