DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and HOS3

DIOPT Version :9

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_015209.1 Gene:HOS3 / 855987 SGDID:S000006037 Length:697 Species:Saccharomyces cerevisiae


Alignment Length:502 Identity:106/502 - (21%)
Similarity:172/502 - (34%) Gaps:180/502 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 PLSR--------TLSSPLVPLGPHGLSQIPDTGQQPAPIATSSSADHIPP-------VNLSLPHR 808
            ||.|        ..::|.|.......:|||::. :...:.:..|..|:.|       ...::..|
Yeast     8 PLERFYKQFQAFVQNNPNVISAARAAAQIPESA-KAVVVLSPYSLQHVFPREWVTKSYRKTIVER 71

  Fly   809 QHRQLMS--------TLYASQL---RNHQPSASGSPPHKVTTGLAYDPLMLK-HSCICGDNAQHP 861
            ..|.|.|        |:|.|..   .:||...|...||           :|| |.          
Yeast    72 PERLLASSMGISAAITMYPSLFTLKSSHQRKGSLMAPH-----------VLKVHG---------- 115

  Fly   862 EHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEAHAMLFGSNQCQLSRPKLENTLSA 926
                   |.|    ..:|::.|....|:                :|.|.                
Yeast   116 -------SSW----PAELIELCQMADAK----------------LLKGE---------------- 137

  Fly   927 SFVRLSCGGLGVDLDTTWN------EHHTATAARMAAGCV---IDLALK--TAKGDLRNGFAVVR 980
                       :::..|||      ...|..|.:...|.:   :|...|  :|:......|..:|
Yeast   138 -----------IEVPDTWNSGDIYLSSKTIKALQGTIGAIETGVDSIFKGPSAEHISNRAFVAIR 191

  Fly   981 PPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQ-------------- 1031
            |||||.......|||..|:..:|.:...... .|..::::|:|:|||:|||              
Yeast   192 PPGHHCHYGTPSGFCLLNNAHVAIEYAYDTY-NVTHVVVLDFDLHHGDGTQDICWKRAGFKPEEE 255

  Fly  1032 ----------QAFYQSPDILYLSIHRHDDGNFFPGTGG---------PTECGSGAGLGFNVNISW 1077
                      :.|.:.|.:.|.|:|   |.|.||...|         .:.|...:   .::|| |
Yeast   256 PEDSSYDDFGKKFAEFPKVGYFSMH---DINSFPTESGFATKENIKNASTCIMNS---HDLNI-W 313

  Fly  1078 SGALNPPLGDAEYIAAFRTVVMPI------------------ARSFNPDIVLVSSGFDAATGHPA 1124
            :..|:....:.|:...:||....:                  .|.|. .:|::|:||||:.....
Yeast   314 NIHLSKWTTEEEFNVLYRTKYRTLFAKADEFFRSAKLEMNQQGRPFK-GLVVISAGFDASEFEQT 377

  Fly  1125 PLGGYHVS-PACF-GFMTRELLQLA----NGKVVLALEGGYDLAAIC 1165
            .:..:.|: |..| ...|::.|:||    :|||:..:||||...|||
Yeast   378 SMQRHSVNVPTSFYTTFTKDALKLAQMHCHGKVLSLMEGGYSDKAIC 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 iSH2_PI3K_IA_R 43..>87 CDD:304922
HDAC_classIIa 837..1211 CDD:212544 83/398 (21%)
HOS3NP_015209.1 HDAC_Hos3 47..435 CDD:212522 98/462 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344912
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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