DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and HOS3

DIOPT Version :10

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_015209.1 Gene:HOS3 / 855987 SGDID:S000006037 Length:697 Species:Saccharomyces cerevisiae


Alignment Length:507 Identity:107/507 - (21%)
Similarity:170/507 - (33%) Gaps:190/507 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 PLSR--------TLSSPLVPLGPHGLSQIPDTGQQPAPIATSSSADHIPP-------VNLSLPHR 808
            ||.|        ..::|.|.......:|||::. :...:.:..|..|:.|       ...::..|
Yeast     8 PLERFYKQFQAFVQNNPNVISAARAAAQIPESA-KAVVVLSPYSLQHVFPREWVTKSYRKTIVER 71

  Fly   809 QHRQLMS--------TLYASQL---RNHQPSASGSPPHKVTTGLAYDPLMLK-HSCICGDNAQHP 861
            ..|.|.|        |:|.|..   .:||...|...||           :|| |.          
Yeast    72 PERLLASSMGISAAITMYPSLFTLKSSHQRKGSLMAPH-----------VLKVHG---------- 115

  Fly   862 EHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEAHAMLFGSNQCQLSRPKLENTLSA 926
                   |.|    ..:|::.|....|:                :|.|.                
Yeast   116 -------SSW----PAELIELCQMADAK----------------LLKGE---------------- 137

  Fly   927 SFVRLSCGGLGVDLDTTWN------EHHTATAARMAAGCV---IDLALK--TAKGDLRNGFAVVR 980
                       :::..|||      ...|..|.:...|.:   :|...|  :|:......|..:|
Yeast   138 -----------IEVPDTWNSGDIYLSSKTIKALQGTIGAIETGVDSIFKGPSAEHISNRAFVAIR 191

  Fly   981 PPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQ-------------- 1031
            |||||.......|||..|:..:|.:...... .|..::::|:|:|||:|||              
Yeast   192 PPGHHCHYGTPSGFCLLNNAHVAIEYAYDTY-NVTHVVVLDFDLHHGDGTQDICWKRAGFKPEEE 255

  Fly  1032 ----------QAFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNIS---------- 1076
                      :.|.:.|.:.|.|:|   |.|.|     |||    :|.....||.          
Yeast   256 PEDSSYDDFGKKFAEFPKVGYFSMH---DINSF-----PTE----SGFATKENIKNASTCIMNSH 308

  Fly  1077 ----WSGALNPPLGDAEYIAAFRTVVMPI------------------ARSFNPDIVLVSSGFDAA 1119
                |:..|:....:.|:...:||....:                  .|.|. .:|::|:||||:
Yeast   309 DLNIWNIHLSKWTTEEEFNVLYRTKYRTLFAKADEFFRSAKLEMNQQGRPFK-GLVVISAGFDAS 372

  Fly  1120 TGHPAPLGGYHVS-PACF-GFMTRELLQLA----NGKVVLALEGGYDLAAIC 1165
            ......:..:.|: |..| ...|::.|:||    :|||:..:||||...|||
Yeast   373 EFEQTSMQRHSVNVPTSFYTTFTKDALKLAQMHCHGKVLSLMEGGYSDKAIC 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 ClassIIa_HDAC_Gln-rich-N 43..>87 CDD:421006
HDAC_classIIa 837..1211 CDD:212544 84/403 (21%)
HOS3NP_015209.1 HDAC_Hos3 47..435 CDD:212522 99/467 (21%)
Blue background indicates that the domain is not in the aligned region.

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