DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4404 and Hmr

DIOPT Version :10

Sequence 1:NP_572838.2 Gene:CG4404 / 32241 FlyBaseID:FBgn0030432 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_572637.2 Gene:Hmr / 31988 FlyBaseID:FBgn0001206 Length:1413 Species:Drosophila melanogaster


Alignment Length:206 Identity:39/206 - (18%)
Similarity:74/206 - (35%) Gaps:63/206 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VQFVENQPCLWNYTHPGYSKKEDVQRAWQQVANDIKDTVRNCRERWRTIRSSFLRSLKLARTQTG 83
            :..|..||.|::..||.:......::.|:::|:.:.....||:..|..:|..:.|.:        
  Fly    60 IALVRRQPLLYDARHPKFRDVAQREKQWKKIASRLATNATNCKRSWSALRYKYQRHV-------- 116

  Fly    84 RGKRKYYLSKYLQFLVPFTKSRSCHKQLPGMVLRKPGQAATAQQEDEV----------------V 132
            |..|.::.|       ...|.|:..:..|.|           :.|:|:                :
  Fly   117 RRLRNFHRS-------AIQKDRAALRWRPCM-----------EYEEEMRFMYTHVARFPLIVDKI 163

  Fly   133 AAE--EEAKVSDGEMPLDVQVSEEEHRRNQEQDREQPTACLPLRLHSIKVEHDSSNANQQLERMV 195
            ..|  |:..|.:.|...||:|.|..                |:.:..:.||.|.: .|.:..|: 
  Fly   164 PTEILEKEHVDESETRPDVEVIENP----------------PMDIIDLDVEEDPT-YNYRCNRL- 210

  Fly   196 SQQSLVSVPAA 206
             |:.|:...:|
  Fly   211 -QRRLIEAVSA 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4404NP_572838.2 MADF 17..103 CDD:214738 16/83 (19%)
BESS 267..301 CDD:460758
HmrNP_572637.2 MADF_DNA_bdg 59..149 CDD:463144 22/114 (19%)
GT1 213..295 CDD:474047 2/8 (25%)
PHA03247 <474..864 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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