DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and Rab27b

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_085031.3 Gene:Rab27b / 80718 MGIID:1931295 Length:218 Species:Mus musculus


Alignment Length:185 Identity:63/185 - (34%)
Similarity:96/185 - (51%) Gaps:14/185 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTT-TILLEGK-- 66
            |||||:|:|.:|||.|||...|....|......|.:  |.|...   :.|.|.|. .....||  
Mouse     5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFRE---KRVVYDTQGADGASGKAF 66

  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA----PGIPKV 127
            :|.||||||:||.||.::..::.|.|.|.:|::|:|::.||..:..|:.::..:|    |.|  |
Mouse    67 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--V 129

  Fly   128 LVGNRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHR 182
            |:||:..|..:|:|..:||...|.:..:..||.|.....|:.:|...|..:.:.|
Mouse   130 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 63/185 (34%)
SOCS 192..234 CDD:470605
Rab27bNP_085031.3 Rab27A 6..185 CDD:206700 62/184 (34%)
Effector region. /evidence=ECO:0000250 38..46 2/7 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..218
Blue background indicates that the domain is not in the aligned region.

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