DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and cracr2ab

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_009298523.1 Gene:cracr2ab / 564347 ZFINID:ZDB-GENE-041210-94 Length:773 Species:Danio rerio


Alignment Length:201 Identity:69/201 - (34%)
Similarity:104/201 - (51%) Gaps:21/201 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLKVLLVGDSDVGKHEILSNLEDPSTESPFCSG--NDCTSHILQTVAYKTTTILLEGKRVKLQLW 73
            |.||:|||:|.|||..:|..         ||.|  :..||..: .:.|...|:.|....|.||||
Zfish   586 LFKVILVGNSSVGKTALLRR---------FCDGQFHSATSATV-GIDYSVRTLNLGDSHVALQLW 640

  Fly    74 DTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG--IPKVLVGNRLHLA 136
            ||:||.|:.:|.:.:.|.|.|::::||||.:.||..:..||..:.| |.|  ||.:|:||:....
Zfish   641 DTAGQERYRSITKQFFRKADGVVVIYDITMEDSFSSVRPWLSSIQE-AVGDPIPVMLLGNKSDKE 704

  Fly   137 FKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQEL- 200
            .:|:|..|:|:..|...|:..:|.|.....|:.|:...|||:.  |...:.:|.:...|..|.| 
Zfish   705 NEREVQTKEADLLAEEANLMFYECSAYTGANVLEAMIHLARVL--REQEDRVWVNTVRLGDQPLK 767

  Fly   201 ---CCR 203
               ||:
Zfish   768 KKTCCK 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 69/201 (34%)
SOCS 192..234 CDD:470605 5/16 (31%)
cracr2abXP_009298523.1 FRQ1 <42..108 CDD:444056
Smc <171..>378 CDD:440809
Rab 587..745 CDD:206640 59/168 (35%)
Blue background indicates that the domain is not in the aligned region.

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