DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab1a

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001004787.1 Gene:rab1a / 448007 XenbaseID:XB-GENE-485527 Length:204 Species:Xenopus tropicalis


Alignment Length:188 Identity:75/188 - (39%)
Similarity:109/188 - (57%) Gaps:15/188 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGTMTKDYDYLLKVLLVGDSDVGKHEILSNL-EDPSTESPFCSGNDCTSHILQTVA--YKTTTIL 62
            |.:|..:||||.|:||:|||.|||..:|... :|..|||           .:.|:.  :|..||.
 Frog     1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES-----------YISTIGVDFKIRTIE 54

  Fly    63 LEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA-PGIPK 126
            |:||.:|||:|||:||.||.||..||.|||.|||:|||:|::.||:.:.:||:|:|.:| ..:.|
 Frog    55 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK 119

  Fly   127 VLVGNRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHRNG 184
            :||||:..|..|:.|....|:.:|....:...|.|.....|:.::|..:|.....|.|
 Frog   120 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 73/183 (40%)
SOCS 192..234 CDD:470605
rab1aNP_001004787.1 Rab1_Ypt1 10..175 CDD:206661 69/175 (39%)
Blue background indicates that the domain is not in the aligned region.

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