DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and Cracr2a

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_006506404.1 Gene:Cracr2a / 381812 MGIID:2685919 Length:751 Species:Mus musculus


Alignment Length:172 Identity:66/172 - (38%)
Similarity:93/172 - (54%) Gaps:11/172 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLEGKRVKLQLW 73
            |.|.|::.||||.|||...|..|    .|:.|..|...|..|    .|:..|:.::..:|.||||
Mouse   563 DRLFKIVFVGDSAVGKTSFLRRL----CEARFSPGMAATVGI----DYRVKTVTVDNAQVALQLW 619

  Fly    74 DTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG--IPKVLVGNRLHLA 136
            ||:||.|:..|.:.:.|.|.|:.::||:|.|.||..|.:||..|:| |.|  ||.:|:||:|...
Mouse   620 DTAGQERYRCISQQFFRKADGVAVMYDLTAKQSFLSIRQWLSSVEE-AVGDRIPVLLLGNKLDNE 683

  Fly   137 FKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARM 178
            .:|:|.....|..|..||:..:|.|.....|.:||...|||:
Mouse   684 KEREVPRGLGEQLAKENNLIFYECSACSGHNAQESLLHLARL 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 66/172 (38%)
SOCS 192..234 CDD:470605
Cracr2aXP_006506404.1 FRQ1 <73..137 CDD:444056
FRQ1 110..>187 CDD:444056
Smc <183..>427 CDD:440809
Rab 566..724 CDD:206640 62/166 (37%)
Blue background indicates that the domain is not in the aligned region.

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