DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab1ab

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001007162.1 Gene:rab1ab / 368883 ZFINID:ZDB-GENE-030616-564 Length:201 Species:Danio rerio


Alignment Length:185 Identity:74/185 - (40%)
Similarity:107/185 - (57%) Gaps:15/185 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNL-EDPSTESPFCSGNDCTSHILQTVA--YKTTTILLEG 65
            |..:||||.|:||:|||.|||..:|... :|..|||           .:.|:.  :|..||.|:|
Zfish     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES-----------YISTIGVDFKIRTIELDG 54

  Fly    66 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA-PGIPKVLV 129
            |.:|||:|||:||.||.||..||.|||.|||:|||:|::.||:.:.:||:|:|.:| ..:.|:||
Zfish    55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 119

  Fly   130 GNRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHRNG 184
            ||:..|..|:.|....|:.:|....:...|.|.....|:.::|..:|.....|.|
Zfish   120 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 73/183 (40%)
SOCS 192..234 CDD:470605
rab1abNP_001007162.1 Rab1_Ypt1 7..172 CDD:206661 69/175 (39%)
Blue background indicates that the domain is not in the aligned region.

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