DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab-10

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_491857.1 Gene:rab-10 / 266836 WormBaseID:WBGene00004273 Length:201 Species:Caenorhabditis elegans


Alignment Length:178 Identity:76/178 - (42%)
Similarity:108/178 - (60%) Gaps:13/178 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGKRV 68
            :.||.|.|:||:|||.|||..||....|.:..:.|.|  |.|          :|..||.|:||::
 Worm     4 RPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGID----------FKIKTIELKGKKI 58

  Fly    69 KLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA-PGIPKVLVGNR 132
            |||:|||:||.||.||..||.|||.||:|||||||..|||.|.:||:.:|||| ..:.|:::||:
 Worm    59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNK 123

  Fly   133 LHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMAL 180
            ..::.:|.|:.::.|..|..:.:|..|.|...|.::..:|.:||...|
 Worm   124 CDMSDRRVVSRERGEKIAQDHGISFHETSAKLNVHVDTAFYDLAEAIL 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 76/178 (43%)
SOCS 192..234 CDD:470605
rab-10NP_491857.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 75/175 (43%)
Blue background indicates that the domain is not in the aligned region.

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