DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and Rab8a

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_075615.2 Gene:Rab8a / 17274 MGIID:96960 Length:207 Species:Mus musculus


Alignment Length:177 Identity:78/177 - (44%)
Similarity:107/177 - (60%) Gaps:13/177 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK 66
            |.|.||||.|:||:|||.|||..:|....:.:..|.|.|  |.|          :|..||.|:||
Mouse     1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGID----------FKIRTIELDGK 55

  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130
            |:|||:|||:||.||.||..:|.|||.||:|||||||:.|||.|..|::.::|||.. :.|:::|
Mouse    56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120

  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177
            |:..:..||||:.::.|..|....:...|.|...|.|:..:|..|||
Mouse   121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 77/175 (44%)
SOCS 192..234 CDD:470605
Rab8aNP_075615.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 75/172 (44%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 5/23 (22%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 9/16 (56%)
Blue background indicates that the domain is not in the aligned region.

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