DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab-8

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_491199.2 Gene:rab-8 / 171935 WormBaseID:WBGene00004272 Length:211 Species:Caenorhabditis elegans


Alignment Length:177 Identity:77/177 - (43%)
Similarity:106/177 - (59%) Gaps:13/177 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK 66
            |.|.||||.|:||:|||.|||..:|....|.|..:.|.|  |.|          :|..||.|:||
 Worm     1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGID----------FKIRTIELDGK 55

  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130
            ::|||:|||:||.||.||..:|.|||.||||||||||:.||:.|..|::.::|||.. :.::::|
 Worm    56 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIG 120

  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177
            |:..:..:|:|:..:.|..|........|.|...|.||.|:|..|||
 Worm   121 NKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLAR 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 76/175 (43%)
SOCS 192..234 CDD:470605
rab-8NP_491199.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 74/172 (43%)
Blue background indicates that the domain is not in the aligned region.

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