DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab8b

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001090677.1 Gene:rab8b / 100036650 XenbaseID:XB-GENE-480278 Length:207 Species:Xenopus tropicalis


Alignment Length:177 Identity:75/177 - (42%)
Similarity:108/177 - (61%) Gaps:13/177 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK 66
            |.|.||||.|:||:|||.|||..:|....:.:..:.|.|  |.|          :|..||.|:||
 Frog     1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGID----------FKIRTIELDGK 55

  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130
            ::|||:|||:||.||.||..:|.|||.||:|||||||:.|||.|..|::.::|||.. :.::::|
 Frog    56 KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120

  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177
            |:..:..||||:.::.|..|....:...|.|...:.|:.|:|..|||
 Frog   121 NKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEAFFTLAR 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 74/175 (42%)
SOCS 192..234 CDD:470605
rab8bNP_001090677.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 72/172 (42%)
Blue background indicates that the domain is not in the aligned region.

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