DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and si:dkey-16l2.16

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_021327130.1 Gene:si:dkey-16l2.16 / 100003902 ZFINID:ZDB-GENE-141219-36 Length:209 Species:Danio rerio


Alignment Length:175 Identity:68/175 - (38%)
Similarity:99/175 - (56%) Gaps:8/175 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLEGKRVKL 70
            |||.:|.|:|::|||:|||..:|....|.|     .||:..|:   ..|.:|..|:.::|:||||
Zfish     4 KDYHHLFKLLIIGDSNVGKSSLLLRFADNS-----FSGSYITT---IGVDFKIRTVEIDGERVKL 60

  Fly    71 QLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPGIPKVLVGNRLHL 135
            |:|||:||.||.||..:|.|...|:|:|||:||..||..:.|||.|:.::...:.|:||||:...
Zfish    61 QIWDTAGQERFRTITSTYYRNTHGVIIVYDVTNPESFVNVKRWLNEISQNCDNVCKILVGNKNDD 125

  Fly   136 AFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMAL 180
            ..|:.|..:.|..:.....:..||.|...|.|:.|.|.....|.|
Zfish   126 PSKKLVDTQDAMRFGESVGVRLFETSAKENINVEEMFMAFTHMVL 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 68/175 (39%)
SOCS 192..234 CDD:470605
si:dkey-16l2.16XP_021327130.1 P-loop containing Nucleoside Triphosphate Hydrolases 4..209 CDD:476819 68/175 (39%)
Blue background indicates that the domain is not in the aligned region.

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