DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43155 and kcnc1a

DIOPT Version :9

Sequence 1:NP_572720.2 Gene:CG43155 / 32092 FlyBaseID:FBgn0262685 Length:411 Species:Drosophila melanogaster
Sequence 2:XP_005168950.1 Gene:kcnc1a / 565419 ZFINID:ZDB-GENE-061220-10 Length:609 Species:Danio rerio


Alignment Length:455 Identity:93/455 - (20%)
Similarity:158/455 - (34%) Gaps:149/455 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DEASTELL-------EKLKHLDRRVDAAEGGGLAKGTAGGRRSTACWQS---------------- 56
            |:..||.|       |:|:...|         ||.|.:...:....||.                
Zfish   132 DDMDTEALGDPGDGDEELEMTKR---------LAVGDSPDTKGAGFWQRWQRRVWALFEDPYSSK 187

  Fly    57 -MKWKSALNHIGLLVSLSIYCGVGGLIFRHLERPAEVERLSHLKDIVKTHRERFLHTILNNTEVH 120
             .:|.:..:...:|||::.:|                         ::|| |.| :.|:|.|.|:
Zfish   188 YARWVAFASLFFILVSITTFC-------------------------LETH-EAF-NPIINRTYVN 225

  Fly   121 NLDELLSFELAKYEAAVQQAAEGGLLIVADKDFPEPYERWSILQAVF------FSSTVLTTIGYG 179
            ..|....|.|...........||..::....:|        :::..|      |....|..|.:.
Zfish   226 TQDNTSRFHLETETVVYLTYIEGVCVVWFTFEF--------LMRVTFCPDKKKFIKNTLNIIDFV 282

  Fly   180 NIVPVTTGGRVFCICFALIGIPFT--------LTVIADWGRLFATAVSVFGKHMPTKPKFT-NFI 235
            .|:|       |.:...|.|:..:        |.|:.     |...:.:|        |.| :|:
Zfish   283 AILP-------FYLEVGLSGLSSSEAKDVLGFLRVVR-----FVRILRIF--------KLTRHFV 327

  Fly   236 G----------KTWFYAILAVGFLGVYLAAGAGLLLLWE-----------DDWTFFD----GFYF 275
            |          .|..:.:|.: ||.:.:...|.::...|           .:.|.|.    ||::
Zfish   328 GLRVLGHTLRASTNEFLLLII-FLALGVLIFATMIYYAERIGANPNDPRASEHTHFKNIPIGFWW 391

  Fly   276 CFITMTTIGFGDLVPKKPNYML---LCTLYILIGLAL-TSTIIELVRRQYATSWAKLQELSGPMA 336
            ..:||||:|:||:.|:..:.||   ||.|..::.:|: ...|:......|:.:.|| |:|.....
Zfish   392 AVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAK-QKLPKKKN 455

  Fly   337 ETLRRLGETAGTGLDYTALQKVLTVSMPKWNSKKNEHSPDIAALEAITNAILKEVKEAQNNKPKV 401
            :.:.|..:........:|:           ||.  .|||.|:  |....|..:|:.|.....|||
Zfish   456 KHIPRAPQLGSANYCKSAM-----------NSP--HHSPQIS--EHCALAAQEEILEMNRADPKV 505

  Fly   402  401
            Zfish   506  505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43155NP_572720.2 Ion_trans_2 <157..214 CDD:285168 11/70 (16%)
Ion_trans <240..314 CDD:278921 23/92 (25%)
Ion_trans_2 <266..319 CDD:285168 19/60 (32%)
kcnc1aXP_005168950.1 BTB 10..112 CDD:197585
BTB_2 10..104 CDD:280393
Ion_trans 243..445 CDD:278921 46/230 (20%)
Ion_trans_2 <388..435 CDD:285168 17/46 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.