DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk1 and LCBK1

DIOPT Version :10

Sequence 1:NP_572717.1 Gene:Sk1 / 32089 FlyBaseID:FBgn0030300 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_001031929.4 Gene:LCBK1 / 832411 AraportID:AT5G23450 Length:778 Species:Arabidopsis thaliana


Alignment Length:805 Identity:174/805 - (21%)
Similarity:286/805 - (35%) Gaps:273/805 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 TEVASGTPTELSEIFFVDNSRRKQSIKI-----------QVKLCPEGVYLRRETEEDDHINEQLI 82
            :::|:|...:.|.|.|.:  :|.:.:|.           |||..|           |:|      
plant    30 SQIATGGSQQSSPIVFPE--KRNKKVKASSRRGEVTNDPQVKPKP-----------DEH------ 75

  Fly    83 RID--------DIIGSR-YGRRL---KKRARGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYL 135
            |||        |::||. |..:|   |:::..|.::        .|......:|.|....:.|.|
plant    76 RIDIGGGDEKSDLLGSLVYAGKLVLDKRKSASGKDA--------TEIQQPAATDISIKKAVDAKL 132

  Fly   136 KKEKPLRRVQTLRILRFRSSND-----YGVNLQTAEMWHHTIRKHKRGNGS-------------- 181
            .....:.....|::      ||     |.|.|:     |.|:..:..|.||              
plant   133 TSSALVWGSDMLQL------NDVVSVTYNVGLR-----HFTVHAYPIGKGSCGLSCFTKPKRSRK 186

  Fly   182 --------------------------------------------SSPADCGKQL----------L 192
                                                        |.|.|...:|          |
plant   187 DFRFVAPTVEEAVQWVASFGDQQCFINCLPHPLVAKKQASSELFSVPIDTPPELVFRCKSAPKML 251

  Fly   193 ILLNPKSGSGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSGIVVASGD 257
            ::|||:||.|:..::|...|.|:...|.::.::..||...:|:|...| .|:.....||:...||
plant   252 VILNPRSGHGRSIKVFHNVVEPIFKLAGIKMEVVKTTKAGHARELAST-VDINLCSDGIICVGGD 315

  Fly   258 GLF---------------YEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHHCNEPYEP 307
            |:.               ::|||||:.|.:.:... .:|:||:|.||.|.|..:|. ...:|   
plant   316 GIINENSLGRLRWIQKTAFDVLNGLLTRSNPKEGV-SIPIGIVPAGSDNSLVWTVL-GVRDP--- 375

  Fly   308 KPILHATLTCMAGKSTPMDVVRVE-LATRDKHFVM-YSFLSVGWGLIADI-DIESERLRSIGAQR 369
               :.|.|:.:.|..|..||..|| :.|...||.| .|:    :|.::|: ::..:..:..|..|
plant   376 ---ISAALSIVKGGLTATDVFAVEWIHTGIIHFGMTVSY----YGFVSDVLELSEKYQKRFGPLR 433

  Fly   370 FTLWAIKRLIGLRSYKGRVSYLL-----GKGKKEPPVEA--------------ARE-LPAESTAA 414
            :.:....:.:.|..|...|.||.     .:||.....||              :|| .|..|:.:
plant   434 YFVAGFLKFMCLPKYSYEVEYLPAQKEDAEGKIRLEKEAVDMQDLYTDVMRRSSREGFPRASSLS 498

  Fly   415 GIRSSLPLNAGEF------HDLPEEEEGEAVLD--------GEQFADAISLDRSVYRQHADS--- 462
            .|.|.:..:.||.      |...|..|....:|        |.:   .::.:..|....|.|   
plant   499 SIDSIMTPSVGELDTCSSTHASTEPSEYVRGIDPKMKRLSSGRR---DVTAEPEVIHPQAQSTTP 560

  Fly   463 -WHSAMSR------------------RTAYYSLG--------------------GPSMRSNRSRM 488
             |....|:                  |.::.:.|                    ||...:..|..
plant   561 NWPRTRSKSRMDKGWMGLTSVQDPPTRCSWGNTGGQDREDISSTVSDPGPIWDAGPKWDTEPSAW 625

  Fly   489 SISQRIEAANAEFAERVPTG----TIPPLQMPLLSSDGWICEDGDF--VMV--HAAYTTHLSSDV 545
            .:...||....  .|.:.||    :|.|     :..|.|:...|.|  :||  ||..|...|..|
plant   626 DVENSIELPGP--PEDIETGLRKQSITP-----IFEDKWVSRKGHFLGIMVCNHACRTVQSSQVV 683

  Fly   546 FFAPESRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRAFRIEPS---- 606
              ||.|..|||.:.:::: .|..|.:||.|.:.|..|.||.:   |:::.|..::.:|:..    
plant   684 --APNSEHDDGTMDMLLV-HGCGRLRLLRFFILLQTGRHLSL---PYVECVKVKSVKIKAGKNTH 742

  Fly   607 SSDGILVVDGERVE-YGPIQAEVMP 630
            .|.||   |||... :|.:.:.::|
plant   743 DSCGI---DGELFALHGEVISTMLP 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk1NP_572717.1 PLN02958 <189..622 CDD:215517 130/549 (24%)
LCBK1NP_001031929.4 DAGK_cat 249..395 CDD:425868 44/154 (29%)

Return to query results.
Submit another query.