DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sofe and prc1

DIOPT Version :9

Sequence 1:NP_001285092.1 Gene:sofe / 32016 FlyBaseID:FBgn0030242 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_031753562.1 Gene:prc1 / 100216075 XenbaseID:XB-GENE-963901 Length:620 Species:Xenopus tropicalis


Alignment Length:615 Identity:157/615 - (25%)
Similarity:263/615 - (42%) Gaps:118/615 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EPQAC-EDCLARLKD---------------------HVHTFYTDLRKETSDKEQGILNDIAVLRN 72
            |..|| ...||||:|                     ||:...|.:.:|..:.:|.:|..|.|.|.
 Frog    19 ESVACLNSALARLRDIWEEIGIPEDQRLQRTDAVKRHVNLLLTRMIEEEENLKQRLLKSIDVCRK 83

  Fly    73 EASGLRRLLHKAVDIGERPDDVPMEIWYIKLEK----YIEQLRKELVSRRAEIRELLHQQQQLCD 133
            |.:.|      .:::...|.:...|...::|||    .:|.:.|:...|..|::.|..:.|.|||
 Frog    84 ELNTL------CMELQLPPFEEEEESTILQLEKDLRTRVEVMLKQKKERMHELKLLKERDQDLCD 142

  Fly   134 ELGEQPLSLLADPLPLPEEMDPFREHLAQLRDQRVQR--------------LRDMDELRQ-NIKR 183
            .|...|..:....:|..:|:|.||.|||.|..::..|              :.::|.|.. :.:|
 Frog   143 ILCTSPYHIDGACVPSLQELDQFRRHLAGLSAEKEHREAEFKSTKKQIILCMEELDRLPDTSFER 207

  Fly   184 NIKLLELQLRTDSEKRLLNADNHKLTPYAYVRLQEMDKEFADQVQDLIDRIDEMRGKIECLWQRL 248
            ::      :..|.|...|:.:|  ||....:.:|..:::..:||     ..:|:|.||..||:||
 Frog   208 DV------VCEDEEAFCLSKEN--LTALQELLIQLEEQKMKNQV-----LCEELRSKITELWERL 259

  Fly   249 RMTDEYAMRRVREATSYNQCTYDILREELERCQAMRQQNLIAFIEQLRIEINEWWDLSLKSTEER 313
            ::::|.........|.....|...|:||.:|.|.::.||:...:|.:|:||:.:||....|..:|
 Frog   260 QISEEERDAFAEYMTGSKGKTIKALQEEFDRLQELKLQNIKRIVEAIRLEISSYWDKCFYSAAQR 324

  Fly   314 RRFTTYYCDTQTEDVLEQFEKELDNLKEFYNSNRKIFELYANRGELWTRMEALEAKANDPNRFNN 378
            :.|..:..:...||:|...:.|:..:|::|.|::::|:......|.|......:.||.|||||.|
 Frog   325 QAFVPFSSEDYNEDLLCIHDAEISRIKQYYESHKEMFDGVQKWEENWRLFLEFDKKATDPNRFTN 389

  Fly   379 RGGQLLKEEKERKTIMSRLPKIDQQITELVQVYMSETHTPFLVHGVDILERMSADWERHRQSK-- 441
            |||.||||||:|..:...|||:::::...:..:..|....|.|:....::.::..||...|.|  
 Frog   390 RGGNLLKEEKQRAKLQKMLPKLEEELKTSIIAWEQEQGQEFFVNEKKFMDYVAEQWETFHQDKER 454

  Fly   442 -KQPSAQKKDGSNTSGQMKPPMVPLTPNTQKSNRGIHGSTSSLKKTPTKANASTTAMSTGNLHKR 505
             ||....||                  |.|......:||.   .|||               :||
 Frog   455 EKQERLMKK------------------NRQLEEEMYYGSA---PKTP---------------NKR 483

  Fly   506 RHPQHHNTNSPQPAAAAKRNLIASLECNNASRKVCVNGQKLLKSPQRKVRVLEYSVRRGKGSGRP 570
            |.|   ..::|. :...|.|..:....:|::.:...:| .:..||..:..|.         .|:|
 Frog   484 RVP---GPSTPS-SKCRKLNGTSISSSSNSTLRSAFSG-TMCHSPVSRPPVC---------GGKP 534

  Fly   571 STGSRNPQKI--RPIPKIHVRPPSGEENES 598
            ...||.|.::  .|.||   |....:||.|
 Frog   535 GLPSRTPTRVFKTPQPK---RLEKNKENMS 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sofeNP_001285092.1 MAP65_ASE1 36..598 CDD:281928 153/606 (25%)
prc1XP_031753562.1 MAP65_ASE1 46..620 CDD:397896 149/588 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 206 1.000 Domainoid score I2835
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 206 1.000 Inparanoid score I3615
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D272248at2759
OrthoFinder 1 1.000 - - FOG0001893
OrthoInspector 1 1.000 - - mtm9438
Panther 1 1.100 - - O PTHR19321
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3175
SonicParanoid 1 1.000 - - X857
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

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