DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg8a and Map1lc3b

DIOPT Version :10

Sequence 1:NP_727447.1 Gene:Atg8a / 32001 FlyBaseID:FBgn0052672 Length:121 Species:Drosophila melanogaster
Sequence 2:XP_063134342.1 Gene:Map1lc3b / 64862 RGDID:621315 Length:151 Species:Rattus norvegicus


Alignment Length:90 Identity:28/90 - (31%)
Similarity:50/90 - (55%) Gaps:2/90 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NVIPPTSATMGS 93
            ||:|: ..:.::..|||.|:|||..:.:.:...:||:|:.|....|.|..|| :.:...|..:..
  Rat    59 VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 123

  Fly    94 LYQEHHEEDYFLYIAYSDENVYGMA 118
            :|:...:||.|||:.|:.:..:|.|
  Rat   124 VYESERDEDGFLYMVYASQETFGTA 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg8aNP_727447.1 Ubl_ATG8_GABARAP 2..116 CDD:340752 26/86 (30%)
Map1lc3bXP_063134342.1 None

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