DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg8a and map1lc3a

DIOPT Version :10

Sequence 1:NP_727447.1 Gene:Atg8a / 32001 FlyBaseID:FBgn0052672 Length:121 Species:Drosophila melanogaster
Sequence 2:NP_001007979.1 Gene:map1lc3a / 493344 XenbaseID:XB-GENE-941851 Length:121 Species:Xenopus tropicalis


Alignment Length:114 Identity:37/114 - (32%)
Similarity:68/114 - (59%) Gaps:2/114 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YKEEHAFEKRRAEGDKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRI 68
            :|....|.:|.||..:||.::|:::|||:|: ..:.::..|||.|:|||..:.:.:...:||:|:
 Frog     7 FKHRRTFAERCAEVRQIREQHPNKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRL 71

  Fly    69 HLRPEDALFFFVN-NVIPPTSATMGSLYQEHHEEDYFLYIAYSDENVYG 116
            .|.|..|.|..|| :.:...|..:..:|::..:||.|||:.|:.:..:|
 Frog    72 QLNPTQAFFLLVNQHSMVSVSTPILDIYEQEKDEDGFLYMVYASQETFG 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg8aNP_727447.1 Ubl_ATG8_GABARAP 2..116 CDD:340752 36/112 (32%)
map1lc3aNP_001007979.1 Ubl_ATG8_MAP1LC3A 4..120 CDD:340754 36/112 (32%)

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