DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg8a and map1lc3c

DIOPT Version :10

Sequence 1:NP_727447.1 Gene:Atg8a / 32001 FlyBaseID:FBgn0052672 Length:121 Species:Drosophila melanogaster
Sequence 2:NP_956592.1 Gene:map1lc3c / 393268 ZFINID:ZDB-GENE-040426-1080 Length:128 Species:Danio rerio


Alignment Length:114 Identity:44/114 - (38%)
Similarity:71/114 - (62%) Gaps:2/114 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRI 68
            :|:..:...|:.|...||.|:|.::|||:|:..:.: :..|||.|:|||.:||:.||..:||.|:
Zfish    13 FKQRKSLATRKQEVAGIRTKFPTKIPVIIERYQREKFLPPLDKTKFLVPQELTMTQFVTIIRNRM 77

  Fly    69 HLRPEDALFFFVNNV-IPPTSATMGSLYQEHHEEDYFLYIAYSDENVYG 116
            .|.|..|.:..:||. |...|.||..||::|.:||.|||:.|:.:.::|
Zfish    78 TLMPNQAFYLLINNSGIASMSMTMAQLYKDHKDEDGFLYMTYASQEMFG 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg8aNP_727447.1 Ubl_ATG8_GABARAP 2..116 CDD:340752 43/112 (38%)
map1lc3cNP_956592.1 Ubl_ATG8_MAP1LC3C 13..125 CDD:340756 43/111 (39%)

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