DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg8a and map1lc3cl

DIOPT Version :10

Sequence 1:NP_727447.1 Gene:Atg8a / 32001 FlyBaseID:FBgn0052672 Length:121 Species:Drosophila melanogaster
Sequence 2:XP_073778324.1 Gene:map1lc3cl / 100330105 ZFINID:ZDB-GENE-140819-1 Length:202 Species:Danio rerio


Alignment Length:114 Identity:42/114 - (36%)
Similarity:72/114 - (63%) Gaps:2/114 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YKEEHAFEKRRAEGDKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRI 68
            :|:......|:.|...||.|:|:::|||||: ..:.::..|||.|:|||::||:|||..|:|.:|
Zfish    89 FKQRKCLATRKDEVCTIRSKFPNKLPVIVERYLREKKLPLLDKSKFLVPNELTLGQFVSLLRSKI 153

  Fly    69 HLRPEDALFFFVNNV-IPPTSATMGSLYQEHHEEDYFLYIAYSDENVYG 116
            .|....||:..|:.. :...||:||.:|.:..:.|.|||:.|:.::::|
Zfish   154 ALEASQALYLLVSGKNMSCLSASMGEVYSQFRDPDGFLYMTYASQDMFG 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg8aNP_727447.1 Ubl_ATG8_GABARAP 2..116 CDD:340752 41/112 (37%)
map1lc3clXP_073778324.1 None

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