DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LysRS and MSK1

DIOPT Version :9

Sequence 1:NP_001188571.1 Gene:LysRS / 31904 FlyBaseID:FBgn0027084 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_014326.1 Gene:MSK1 / 855651 SGDID:S000005017 Length:576 Species:Saccharomyces cerevisiae


Alignment Length:587 Identity:191/587 - (32%)
Similarity:284/587 - (48%) Gaps:109/587 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 SAAEEEEISPNEYFKLRSAAVQELKRSPATDPYPHKFHVSSSLEDFIAKY---------ENSLKE 133
            |.|...:.|..|..:.....|::|.|.     ||..  ..|:|.|...:|         |..|..
Yeast    30 SLAHAVDTSKMEATRRNGQIVKDLGRY-----YPSM--SESALHDLCQEYKEVTIADFNERFLGN 87

  Fly   134 GETLE-----NVKLSVAGRVHAIRESGAKLIFYDL--RGEGVK----VQVMAS----AKSYKSEA 183
            ..||.     |:.||:.||:.:||.||.|::|.||  ...|:|    :|::.:    ..|.:.:|
Yeast    88 PATLHHEDNPNLLLSINGRIKSIRFSGQKIVFIDLYNGSSGLKNDTQLQLIVNYNKIGGSSEDKA 152

  Fly   184 DFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLP--------HLHFGLKDKE 240
            :|....:.|::||.|..:|:||.::        |.:|:||...:.||        .|...|.|:.
Yeast   153 NFSEYMNFLKKGDYIKALGYPGFSQ--------SRVKMLSLICNKLPIVLSVSQLPLPSRLNDET 209

  Fly   241 TRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFVTHHND 305
            .....|.:|..||..  :...:||:||..:|:|||...|:|:|||:::..:.||.||||:|...|
Yeast   210 KIKSNRVVDYQLNGT--QTLLVRARIIKLLRKFLDDRNFVEVETPILSSKSNGAMAKPFITSSKD 272

  Fly   306 LKMDLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDIT 370
            .. .|.:||||||:.|.|::.||.:|||||:.|||||||.|||.||:|.|||..|....||:..|
Yeast   273 FD-HLELRIAPELWLKRLIISGLQKVYEIGKVFRNEGIDSTHNAEFSTLEFYETYMSMDDIVTRT 336

  Fly   371 EQLVSGMVKAIRGSYKVIYHPEGPEGPEQELDFTP---PFKRVSMIKTLEEKLQVK--------- 423
            |.|...::..::..::....|......|..|..:.   .|::|..:.||.::|.:.         
Yeast   337 EDLFKFLITNLQKFFQDTRLPVPKTFSELHLALSENNWKFRKVEFLPTLNKELGIDLMNSGLDIN 401

  Fly   424 -----------------FPAADTFNSPETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEE- 470
                             ||:||     .|.| ||.|               ::|:||...|:|: 
Yeast   402 KPSELLKALPKDIAKKYFPSAD-----NTGQ-LSSL---------------QILNKLSDVFLEQR 445

  Fly   471 FCVN--PTFICEHPQIMSPLAKYHRSIPGLTERFELFVAKKEICNAYTELNDPVVQRERFEQQAS 533
            .|.:  ||.|...|.|:|||||.......:|:|||:|:..||..|||.|.|.|.:|.::|.||..
Yeast   446 HCQSTLPTVIYHQPAILSPLAKTDPQNKQVTKRFEVFIKGKEYINAYEEENCPQLQLQKFLQQKQ 510

  Fly   534 -DKAAGDDEAQL---VDENFCTSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFPAMKPEDA 594
             ::..|:....|   :|..:..:::||:||.||||:|||||.|...|...|:|||.|..:  :|.
Yeast   511 INELTGNKTETLSPVIDYQYVETMKYGMPPVGGFGLGIDRLCMLFCDKKRIEEVLPFGCV--DDV 573

  Fly   595 NR 596
            ||
Yeast   574 NR 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysRSNP_001188571.1 PLN02502 42..593 CDD:215278 188/582 (32%)
LysRS_N 141..250 CDD:239817 35/126 (28%)
LysRS_core 253..591 CDD:238398 133/373 (36%)
MSK1NP_014326.1 lysS_bact 41..573 CDD:273107 185/572 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S299
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR42918
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.820

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