DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LysRS and kars1

DIOPT Version :9

Sequence 1:NP_001188571.1 Gene:LysRS / 31904 FlyBaseID:FBgn0027084 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_012816251.2 Gene:kars1 / 407964 XenbaseID:XB-GENE-943468 Length:605 Species:Xenopus tropicalis


Alignment Length:563 Identity:395/563 - (70%)
Similarity:467/563 - (82%) Gaps:7/563 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 KLELKRRLKAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEEEISPNEYFKLRSAAVQELKRSPAT 107
            |.|.|||||||:||   .||.|....:|.....:.:|.:||.:.||:|||:|:.|:|:|| ....
 Frog    45 KSEQKRRLKAEKKA---TEKEAKHKEQNEKLHTEEAAIDEETLDPNQYFKIRTQAIQQLK-GTKD 105

  Fly   108 DPYPHKFHVSSSLEDFIAKYENSLKEGETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQV 172
            ||||||:||..||.::|.|| |:|:.|:.|..| :|:|||:||.|.||||||||||||||.|:||
 Frog   106 DPYPHKYHVDMSLTEYIQKY-NNLQTGDQLSEV-VSIAGRIHAKRISGAKLIFYDLRGEGTKLQV 168

  Fly   173 MASAKSYKSEADFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGLK 237
            ||:::.||||.:|....:||||||:|||.|:||||||||||::|.|:.|||||||||||||||||
 Frog   169 MANSRFYKSEEEFATINNKLRRGDLIGVKGNPGKTKKGELSIIPHEMILLSPCLHMLPHLHFGLK 233

  Fly   238 DKETRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFVTH 302
            ||||||||||||||||:.||:||.:|||:|:|:|:|||.||||||||||||:|.|||.||||:|:
 Frog   234 DKETRYRQRYLDLILNDYVRQKFIVRAKLITYLRKFLDDLGFLEIETPMMNVIPGGAVAKPFITY 298

  Fly   303 HNDLKMDLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIM 367
            ||:|.|.|:||||||||||||||||:|||||||||||||||||||||||||||||||||||.|:|
 Frog   299 HNELDMKLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYYDLM 363

  Fly   368 DITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNS 432
            :|||:|:|||||.|.|.||||||||||||||.|:||||||:|:||:..||:.|..|.||.|.|::
 Frog   364 EITEKLLSGMVKHITGGYKVIYHPEGPEGPEYEIDFTPPFRRISMVHELEKALGKKLPATDQFDT 428

  Fly   433 PETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQIMSPLAKYHRSIPG 497
            .||.:.|..:|.:.:||||||||||||||||||:|:|..|:|||:||:||||||||||:|||..|
 Frog   429 EETRKLLDDICVEKEVECPAPRTTARLLDKLVGDFLEVTCINPTYICDHPQIMSPLAKWHRSEKG 493

  Fly   498 LTERFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFCTSLEYGLPPTGG 562
            |||||||||.|||||||||||||||.|||.||.||..||||||||..:||.|||:||||||||.|
 Frog   494 LTERFELFVMKKEICNAYTELNDPVRQRELFEDQAKAKAAGDDEAMFIDETFCTALEYGLPPTAG 558

  Fly   563 FGMGIDRLAMFLTDSNNIKEVLLFPAMKPEDANRTAAETAPTA 605
            :||||||:||||||||||||||||||||||| |:....:.|.:
 Frog   559 WGMGIDRVAMFLTDSNNIKEVLLFPAMKPED-NKKDPNSTPNS 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysRSNP_001188571.1 PLN02502 42..593 CDD:215278 391/549 (71%)
LysRS_N 141..250 CDD:239817 81/108 (75%)
LysRS_core 253..591 CDD:238398 258/337 (77%)
kars1XP_012816251.2 PLN02502 44..589 CDD:215278 391/549 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 577 1.000 Domainoid score I219
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H4053
Inparanoid 1 1.050 804 1.000 Inparanoid score I486
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D258797at33208
OrthoFinder 1 1.000 - - FOG0002656
OrthoInspector 1 1.000 - - oto102816
Panther 1 1.100 - - LDO PTHR42918
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1764
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

Return to query results.
Submit another query.