DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment p24-2 and Tmed11

DIOPT Version :10

Sequence 1:NP_788617.1 Gene:p24-2 / 318890 FlyBaseID:FBgn0053105 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_001419923.1 Gene:Tmed11 / 689712 RGDID:1588776 Length:214 Species:Rattus norvegicus


Alignment Length:204 Identity:91/204 - (44%)
Similarity:139/204 - (68%) Gaps:7/204 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LILCVLHS-ACGLYFHISQTERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEVR 73
            ::||...| :...|||..:.|.||.||::|.:|.:...:|::.:|...:.|:.|:||:||.|.|.
  Rat     6 ILLCFSFSFSAAFYFHAGEREEKCIIEDIPSDTLITGTFKIQQWDIGRHDFLESAPGLGMFVTVT 70

  Fly    74 DSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNSTAW--FSGAQLRVHLDIQVGEHAIDYAHV 136
            ::|: ::||::|.:||...||||:.|||:||:.||||.:  |.|::||:||||:||||.:|...|
  Rat    71 NNDE-VLLSKLYGAQGTFYFTSHSSGEHIICLESNSTQFVSFGGSKLRIHLDIRVGEHDLDAVIV 134

  Fly   137 AQKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFW 201
            ..|:|:.|:...:|.|::|:|||.|||:|||.|||.||.|||.||..||||:.||.::.:.:|.:
  Rat   135 QAKDKVNEVAFTLRHLIEQIEQILKEQDYQRDREENFRITSEDTNRNVLWWAFAQILIFISVGIF 199

  Fly   202 ---HLFNLF 207
               ||.:.|
  Rat   200 QMKHLKDFF 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-2NP_788617.1 EMP24_GP25L 20..206 CDD:426051 87/190 (46%)
Tmed11NP_001419923.1 EMP24_GP25L 17..209 CDD:426051 88/193 (46%)

Return to query results.
Submit another query.