DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-2 and tmed4

DIOPT Version :10

Sequence 1:NP_788617.1 Gene:p24-2 / 318890 FlyBaseID:FBgn0053105 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_001015779.1 Gene:tmed4 / 548496 XenbaseID:XB-GENE-941602 Length:214 Species:Xenopus tropicalis


Alignment Length:205 Identity:134/205 - (65%)
Similarity:166/205 - (80%) Gaps:7/205 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LILCVLHSAC--GLYFHISQTERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEV 72
            |:|.:|....  ||||||.:||::|||||:||||.||.|||.:|:|.:|..|:||:||:||||||
 Frog     4 LLLGILQFGLSRGLYFHIGETEKRCFIEEIPDETMVIGNYKTQLWDKQSETFLPSTPGLGMHVEV 68

  Fly    73 RDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNST--AWFSGAQLRVHLDIQVGEHAIDYAH 135
            :|||.|::|||.|.|:||.:|||||||||.||:.||||  ::|:|.:||||||||:|||..:|..
 Frog    69 KDSDGKVILSRQYGSEGRFTFTSHTPGEHQICLHSNSTRMSFFAGGKLRVHLDIQIGEHTNNYPE 133

  Fly   136 VAQKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF 200
            :|.|:||||||||:||||||||||.||||||||||||||.||||||.||||||:|||::|:..|.
 Frog   134 IAAKDKLTELQLRVRQLLDQVEQIQKEQNYQRYREERFRLTSESTNQRVLWWSIAQTLILILTGI 198

  Fly   201 W---HLFNLF 207
            |   ||.:.|
 Frog   199 WQMRHLKSFF 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-2NP_788617.1 EMP24_GP25L 20..206 CDD:426051 130/190 (68%)
tmed4NP_001015779.1 EMP24_GP25L 16..209 CDD:426051 131/193 (68%)

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