DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lz and runx1

DIOPT Version :10

Sequence 1:NP_511099.2 Gene:lz / 31883 FlyBaseID:FBgn0002576 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_012813452.1 Gene:runx1 / 100485449 XenbaseID:XB-GENE-483164 Length:500 Species:Xenopus tropicalis


Alignment Length:594 Identity:178/594 - (29%)
Similarity:227/594 - (38%) Gaps:199/594 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 EHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRAGNDENCCAELRNFT 346
            :||||||||.:|.||||.||.|||.|||||:|||||||.:|.|||.||:.||||||..|||||.|
 Frog    57 DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNAT 121

  Fly   347 TQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTVDGPREP-RSKTSPTGG 410
            ..|||.||:||||||||||||||||||||||.|:|||||||.:|||:|||||||| |.|..|..|
 Frog   122 AAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRPKYDPIIG 186

  Fly   411 PH----------YRALGLGQ-------------RPYIDGFPSTKA--------LHELESLRRSAK 444
            |.          |....||:             |..:|  ..||:        |.|||.|||:  
 Frog   187 PGLVGGQIQAEIYSIYSLGKSADSSCVGSFTGHRQKLD--EQTKSGTLSFSERLSELEHLRRT-- 247

  Fly   445 VAAVTTAAAAAATAASAANAVAAAAAAVAVTPTGGGGGVAAGGVAGGAGAGLVQQLSSNYSSPNS 509
                                 |...:....|||                           .:|.:
 Frog   248 ---------------------AMRVSPHHPTPT---------------------------PNPRA 264

  Fly   510 TINSDCQVYKPNAPHIQ-AAEMMGAGEWTNGSSSSAAAYYHSHAHHPHAHHAHAHLQHQMALPPP 573
            |:|............|| ..::..:..|:...|........:.:.||                  
 Frog   265 TLNHSTAFNPQPQSQIQDTRQVQASPPWSYDQSYQYLGSIATQSVHP------------------ 311

  Fly   574 PPPPAAAPVSVGVGGNGATMGMGMGVGVGMGMNHYGGGYD----SANSLEAGQYAAHLPAVL-PE 633
                 |.|:|.|...:..::...:.       :...|..|    |...:...:..:.||::. |.
 Frog   312 -----ATPISPGRASSMTSLSAELS-------SRLSGASDLTAFSDPRVGIDRQFSTLPSISDPR 364

  Fly   634 MHGHG-FATDPYQ-TAGYGGGNTGGGSASKSELDYGGSYNQAWSNGYQNYQYGSCLATAQYGPQA 696
            ||..| |...|.. |:|.|.|.:...||::                |..|               
 Frog   365 MHYPGAFTYTPTPVTSGIGIGMSAMTSATR----------------YHTY--------------- 398

  Fly   697 APPPQPPPPPPVVLCPQLYSTVNQNQIHLHLHSSEKLEQYLGTATSADHLTIGSLTGSSRSSIEI 761
            .|||.|..              :|.|......||.....|.||:..:.| ....::|..||...|
 Frog   399 LPPPYPGS--------------SQAQSSPFQTSSPSYHLYYGTSAGSYH-QFSMMSGGDRSPPRI 448

  Fly   762 ---------GQDQYHQQVHHAQQQQQQQQQQQQVHHPQQQQVESAGEVGGSGAGGVESAREEDVG 817
                     |....:..:.:                 |...||:.|....|......:.|.|:. 
 Frog   449 LPPCTNASTGSTLLNPNLPN-----------------QNDVVEAEGSHSNSPTNMGTTPRLEEA- 495

  Fly   818 DLSQVWRPY 826
                |||||
 Frog   496 ----VWRPY 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lzNP_511099.2 Runt 281..404 CDD:459963 95/122 (78%)
runx1XP_012813452.1 Runt 51..179 CDD:459963 94/121 (78%)
RunxI 407..500 CDD:430037 23/115 (20%)

Return to query results.
Submit another query.