DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and ver-1

DIOPT Version :10

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_497162.2 Gene:ver-1 / 175182 WormBaseID:WBGene00006894 Length:1083 Species:Caenorhabditis elegans


Alignment Length:676 Identity:142/676 - (21%)
Similarity:237/676 - (35%) Gaps:201/676 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 ARKLLLAGGAEAVLPNQ--LLDNFLIKAQV-----LKTYSSLPAFPQPEFMVQSTETQFELTDLH 211
            :|..:..|..|..:..|  |.:|.::|.:|     |:|.......|..:|.:.|.::.....|  
 Worm   518 SRSFVADGTFERKISYQVVLTENMMLKCRVGNRVALETVHVADEIPNIKFKLASNKSAIYEGD-- 580

  Fly   212 PATLYNISVRAMCKDAQVGQSECGQASIEATTEVGLPSPVPAQPKILSRTDRTVTIELS--PIRN 274
                   :|:..|    |.....|:.||         :.|.....||..|:.|...:||  .|||
 Worm   581 -------TVKLTC----VVPKLAGRCSI---------TWVHRNLSILHSTEVTEHSQLSFLYIRN 625

  Fly   275 ------------------DNGPLSKLL----VIVEY-VDNALSQP----FDAQLLG------SWQ 306
                              :|..||.:|    :|..| |....|.|    .|..:.|      .| 
 Worm   626 ATTSASGNYTCVLENQASENFSLSTILKVEPIIAPYIVKTGFSAPTGSKLDCNIDGRPPPEYQW- 689

  Fly   307 QAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTNKPLDQPDAHVHISLGLVSTLEGVT 371
              .:||.||                     |.|:|.     |..::.::.::..|..        
 Worm   690 --FKDGTPY---------------------GTGRRL-----KFFEEDNSGIYQCLAT-------- 718

  Fly   372 KTMYSRGTHDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGSCLLLSLIAYFYLRYKTCRGRRL 436
                     ::..::.:.|...|..:.....|.||:  :..|..::|.......|.:|..|..:|
 Worm   719 ---------NRAGSATNSFELKTAGRSYGIFVLLAI--LALGILVILGWKISTKLGWKKNRDLKL 772

  Fly   437 TGGNTHEMTLQTPIIERENNGYLVEDDPLPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIGD 501
                     |...:|..||.        ||    |.|.|.......:.:.     .|.:.:.||.
 Worm   773 ---------LYKSLIGSENF--------LP----NGKNQFSNFNFEFHKD-----SLEILEPIGS 811

  Fly   502 GRFGEIITGKVSTNDFARDCTLHVLCLDDLNGTT----------------QAQLLRELRQLSQLK 550
            |.||.:..|                   .|.||.                |..::.||:.:|.:.
 Worm   812 GHFGVVRRG-------------------ILKGTKTVVAVKSSSYRSSIGFQKVIVEELKLMSAIP 857

  Fly   551 RQEHLLDFYGV---SASPDWFYLIFE-----------QQRMSL----KRKLVESRLMAPSPRLTS 597
            :..::|...|.   :......|::.|           |||.::    .....:..:....|...|
 Worm   858 KHPNVLALVGAITKNLRHGELYILMEYIDGGNLRDFLQQRRNVFIDELHDNFDENIPLIRPDFNS 922

  Fly   598 LSEQLVLQWIYELASAMNYLSSCQVVHRQLCSHSVFVTSDFKLKLSVFGPLPYMNIARQQPDHNR 662
            ||...::...:::|:.|.:|.:...||..||...|.::....::::.:|    :...:::....|
 Worm   923 LSTTDLVGIAHQIANGMEWLGNVPCVHGNLCCRKVLISKTKTIRITDYG----VGDRQRKSSSMR 983

  Fly   663 WLAPEVLRHQHHHSTRSDVWSLACVAWECCALGGTPYANAVASNQQLLEAIRAAVRPAQPAYVYG 727
            |:|||.:.|| ..|::|||||.....:|...||||||...|..|  :|:.|:...|..||.|...
 Worm   984 WMAPEAIEHQ-MFSSKSDVWSFGICLYEIFTLGGTPYPTCVTEN--ILKHIKNGSRNLQPEYCPS 1045

  Fly   728 DLYQLLLNCWQLEPSER---SSCEDV 750
            .||.|:..||:..|.:|   |.|.::
 Worm  1046 ALYDLMQLCWRAPPQDRPKFSLCSEL 1071

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:460348
fn3 130..222 CDD:394996 15/74 (20%)
PTKc 497..750 CDD:270623 70/289 (24%)
ver-1NP_497162.2 IG_like 578..654 CDD:214653 21/97 (22%)
Ig strand B 582..586 CDD:409353 1/3 (33%)
Ig strand C 596..600 CDD:409353 2/12 (17%)
Ig strand E 619..623 CDD:409353 1/3 (33%)
Ig strand F 633..638 CDD:409353 0/4 (0%)
Ig strand G 647..650 CDD:409353 1/2 (50%)
Ig 663..731 CDD:472250 16/113 (14%)
Ig strand B 674..677 CDD:409565 0/2 (0%)
Ig strand C 686..690 CDD:409565 1/6 (17%)
Ig strand F 712..717 CDD:409565 0/4 (0%)
Ig strand G 725..728 CDD:409565 0/2 (0%)
PTKc 807..1073 CDD:270623 70/291 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.