DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stg1 and cacng3

DIOPT Version :10

Sequence 1:NP_001400987.1 Gene:stg1 / 318064 FlyBaseID:FBgn0288700 Length:1000 Species:Drosophila melanogaster
Sequence 2:XP_002932480.1 Gene:cacng3 / 100488289 XenbaseID:XB-GENE-1010716 Length:317 Species:Xenopus tropicalis


Alignment Length:393 Identity:93/393 - (23%)
Similarity:144/393 - (36%) Gaps:119/393 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 GYLWLITPVAASISVAIVIAALAGPQWLFTEEKLPNANYNGTANFKALDDGAYITK----YTKSS 283
            |...|||.|.|..:.:::..|:....||::         .|....|:.:|.....|    .|.|.
 Frog     7 GVQMLITTVGAFAAFSLMTIAVGTDYWLYS---------RGVCKAKSTNDNETSKKNEEVMTHSG 62

  Fly   284 LWILCTTLPGLDADSYNCVKIDYFSNEG-YQPDPHDSTAAIPYTVTKSCPIF--LAAGVFLVISF 345
            ||..| .|.|  |....|.|||:|..:. |:.|    ||.......::..||  |:.|:......
 Frog    63 LWRTC-CLEG--AFRGMCKKIDHFPEDADYEQD----TAEYLLRAVRASSIFPILSVGLLFFGGL 120

  Fly   346 IVFLIPTCSHQNNLYYFSAGILFIVSGLVMLIGLIAYISILKAEIGSKLRPRSTLQPALIKVSYG 410
            .|.......:::|: ..||||.|:.:||..:||:|.|||....:.|.....:|       ..|||
 Frog   121 CVAASEFYKNKHNV-ILSAGIFFVSAGLSNIIGIIVYISANAGDPGQSDSKKS-------NYSYG 177

  Fly   411 QSFFLFVFGFIVTEFVGVLNIFLFI------------NLQEVSYYSRLPCFSVANIHAKLKEGQH 463
            .||:.....||:.|.||||.:.:||            :|.:.|.:||:|                
 Frog   178 WSFYFGALSFIIAEMVGVLAVHMFIEKHRQIRAKSHSDLFKKSAFSRIP---------------- 226

  Fly   464 PLSDSYK-RYKQPGITTASQEGLSSAGQGQQGHQSHHPTHQPHPTAQPPHGILRSGNSRLHQVYD 527
                ||: |:::...:.:::                       |.::.|..:.:|.|        
 Frog   227 ----SYRYRFRRRSSSRSTE-----------------------PRSRDPSPVGKSFN-------- 256

  Fly   528 AGRGHPGMTGQIGHSGQTQTLPGACRKHPNAGSNLN-------LYLHNDLERRFYFEKPAVSKCN 585
                 |..|..|    ...||..........||.||       |.:||.|.:.:        |.:
 Frog   257 -----PIPTSDI----SLYTLTSRDPTKVTVGSLLNSDREHNFLQVHNSLSKDY--------KDS 304

  Fly   586 LHS 588
            ||:
 Frog   305 LHN 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stg1NP_001400987.1 PMP22_Claudin 235..429 CDD:473919 55/200 (28%)
cacng3XP_002932480.1 PMP22_Claudin 6..197 CDD:395662 62/213 (29%)

Return to query results.
Submit another query.