DRSC/TRiP Functional Genomics Resources

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Protein Alignment: tut and a1cf

Sequence 1:NP_729346.1 Gene:tut FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:XP_009304711.1 Gene:a1cf ZFINID:ZDB-GENE-060824-3 Length:550 Species:Danio rerio

Alignment Length:182 Identity:45/183 (25%)
Similarity:79/183 (43%) Gaps:34/183 (19%)


  Fly    34 EGKGELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSGNSRGYAYLQYINVDLKESAMQ- 97
            |...|:|:..:||:  .....:|.:..:.|::|.:|..:||:||:||||::.:......::||: 
Zfish    53 ERGSEIFVGKLPRD--LFEDELVPLCEKFGKIYEVRMMMDFNGNNRGYAFVTFSTKQEAKNAMKQ 115

  Fly    98 ---YLPMRFRQLCMCLRVE---------PSTNNRELVLKNVESSLRPWQVYQEMLKIHPFTI-VR 149
               |.....|.|.:|..|:         |.|..||             ::..||.|:....: |.
Zfish   116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKRE-------------EILAEMKKVTDGVLDVI 167

  Fly   150 VYEYQLDQF----FYIFEYRNNDSAASAHQR-VRNSIRKFGEHAHISWLTAE 196
            ||....|:.    |...||..:.:||.|.:: :...|:.:|....:.|...|
Zfish   168 VYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPE 219

Known Domains:


GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:240695 24/92 (26%)
DUF3388 <127..169 CDD:288701 10/47 (21%)
a1cfXP_009304711.1 hnRNP-R-Q 6..534 CDD:273732 45/183 (25%)
RRM_SF 55..132 CDD:302621 22/79 (28%)
RRM_SF 134..218 CDD:302621 20/97 (21%)
RRM3_ACF 223..305 CDD:240942
DND1_DSRM 451..529 CDD:291380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG0117
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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